Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00990 511 / 1e-158 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G11950 432 / 5e-130 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 431 / 4e-129 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT1G62310 426 / 8e-128 transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 283 / 1e-78 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT4G21430 180 / 1e-45 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091200 [exp] 432 / 1e-127 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G006200 [exp] 424 / 5e-125 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G082901 [exp] 411 / 2e-119 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.011G009700 [exp] 408 / 2e-119 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 344 / 4e-99 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 305 / 2e-85 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G027000 [exp] 288 / 2e-82 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 278 / 1e-76 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027890 [exp] 611 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 421 / 4e-124 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 402 / 5e-119 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10015260 [exp] 385 / 2e-113 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10037812 [exp] 344 / 2e-99 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 339 / 1e-97 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10004602 [exp] 277 / 5e-82 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 277 / 5e-78 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10006741 [exp] 239 / 7e-65 AT4G21430 440 / 1e-141 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Lus10020084 [exp] 232 / 1e-61 AT4G21430 529 / 2e-172 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.015G012800.9 pacid=42775473 polypeptide=Potri.015G012800.9.p locus=Potri.015G012800 ID=Potri.015G012800.9.v4.1 annot-version=v4.1 ATGGTTGATGATGATGATGGGTACAGGAGGTGTTCAAGAAGTGCAGGCAAGTGGAGGTGTAGGGAGAGAGCTTTTAGTGGCAAAGCGTATTGTGAAAAAC ACCATCTTTATTCAGTGGAGAGGGGTTTGAAGAGAAGCATGGAGAAGAAGAGTGGAAATGGAGGCGGGGTTGAAGTGGGTTCTCAGAAAAAGAAGAGACA GAGGGAGGGAAGTGAAGAGGATTCAGGTATTTTGGCGGGAGAGAAGGAACAGAAGGTTAGTGATCATGTGGGTTTTGGAGATCAAGGGGTTCATGACTGG TTTAGTGGAGGGAATTCAGATGTTTTGGAGTGGTTTGATGATGTAGGTGCTGGTAATGTTGGTGAAAGCTTTCAACTTTGGCAAAACGAAGCTACTGCAC GTGGGAATAATGGGCAGGTTCTTGGTGGTGAGGGGTTTCAAGATAGTTTTGGTGGAGAATGTGGTGGTACTGAGGTTTTGGGTCTGGATGGTAAGGTTTT TCAGGTTTGGGACGGTGAAGGATTTCGATTGGGCGAGTCTGGTCTGGGTGCTAGTGAAAATGGTGTTGTGGGTCTAGGTGATCAAGGGGCCCCAGACCTA TTTTGTCAAGTTAGTGCTGCTAATGTTGGAAATGTGGGCGTGGGTTCTGGTGGTGGAGGAATACACGGGGTATTTGGTGAAGTCAATGGGAAAAGTGGTG ATATAACCCTCTCTGGTGAAAGCATGGAGGGACTATTTGGTGAATGTAAAAATGGAGGTATGGCTGCTAGTGGTGAAGGGGTTCAATGCTGGTGTGGTGA AGCTGGGTGTGCTAGTATTGACGGTGAGGGAATTCAGGGCCTTTTTGGTGAAACTACTTGTGAAAATGGGGGTGAAGGGATTGAAAGTGGATGTCATAGG AATGGAGGTGGAGATGATGTTGAAGATGATGGGAAAACGAACAAGAAGGAAATTTTTGGTGTTGAAGCAGTTGGTATTGACGATTCAAGTGAGTTTGGTG GTGATGACAACGGTGGAGCTGAGGTTTCTCCAGTGAAACGCAAGCGAGGGCGACCAAAGGGTTTAACGAAGAAGAAGAATGATCCTCGAGGTCAAGTAAA ACTTGGCCTAGGTGGTGATAATGTGATCGGAAATGGTAGTGCCGTTGGGATGATTGAAATGGAAATGTTCAGTGAAACCAGTGGTGTCAATGGAGAAGGA AATGAGAATAACCCAGTGGAGGATAAGCAAATCCTTGGTGCTGGAGAATGTATTGAGAGATCAGTTGGAAATGATATTGTGCGGCCAAAGGCAAAGCGTG GCCGACCAAAAGGTTCAGGGAAGAAGCAAAAAGATGTTGCACCTGAAGAAAAACAGTGCTTGCCTGGTGATTTTCTGGGCAATAACAATGCTGGCATTGA GTCTGTTACCCCGGCAACATTGGAGAATGGGAGGACTACTCTTCTATGCGCAGAGGACGATGAAACTCCTGGTGGAACTGAGACTGTCACACCAAAAAGG CGTGGGAGACCAAAGGGATCAAAAAATAAGAATAATGGAGATACTGCAGGTGAGAATCAAGAAATGACTGGTGAAACTAAGGGTTGTATTGGTAGTGTTG TATGGACTCCGATACTAATGGGTGTGGAGAGTGAGACTACTATTGCAGGGGCAGAGGATAGAGAAATTCCTGGTGAAGGCACTTGTGCTAATGGGAAAGT AGAGGAGATCATCGCACCAAAGAAGCGTGGCAGACCAAAGGGTTCAAAAAAGGAGGAAATCCTTGCTGGAGATGATCGAGAAATGCCCGGTGAAACCAAG GATACAACTGACTGTGACAATAGGACTGCTAGATCAATGCAGTTGGAGAGTGAGAGGACTACACTTGAAGGTGCAAAGGACAAAGAATTGCCTGATGAAG TCACTGGTGGTAAAGGGATCATCACACCAAATAGGCGTGGCAGACCCAAGGGTTCAAAGAATAAGAAGGAAAATCTTGCCAGTGGTGAAGCCAAGGTGAG TGTTGATAGTTGTGATAAGACTAATATGCCAAGGGTTTTGTGGAATGAGAGGATTACTCTTTTAGATGAAGAAGAAAATGGAGGCAGTCACGAATTGCCC CGTGGTATTGTGGGTTATAATGAAAGTCGTGATAACAAAGTCAGGCTGGCAGGTTGTGTGAATGACATGACTTGTTTAGGGGAAAATGATGGGGCAATGG CTGATGATAATATTGACAGTAGTTTTGGAGTGAATGATAAAAGCAAACCTAAGCGTAAGCGAGGGCGACCAAAGAACTCGAAAAATAAGCAAAAATCTCT TGCTGGTTACAGGCAACAATTTCCCGGTGATATCATGGTTAGCAATGATGGGGCTGATAATAAAGTTAGGTTGATGGGTTTTGAGAATTGGACGACTGCT ACTTTTGATGGATATAAAGCTTTGTGTAGTCACGCCACTATTGAAGGTGCTGACAACAAAGCTAGTCTGCTAGATTTAGGGAATGGGATGGCTGCTCTTG TGGGTGAAAAAGCTAGGAAATTGCCTAGTGAGGCCACTGGTGTTAGTGGAGATGGTCAGGAAATCATAAAGCCTAGTCTTGACCAAAGAGTGGGCTCCAA GAACAAGCCAAAAAATCCAGCAGGTGATAGTTGGGAATTGCCTAGTGACATTGTGGATAGAAATGGAGATGCGGGCAATGTAATCAGGGAGGTGGTTTTA GAGAATAGGATGGTTGTTTCTTCATGTGAAGGACATCGGGTATTGTCTGTTGAGGTCACTGGCCATAGCAGAGAGGGAAATGAAATTAGAAAGCCTAGGC CACGCGGCCGACCAAAGGGCTCAGTGAAGAAGAAAAATCTTGCTGATGGTCACCAGGAATTGCCTGGGGAAGTTATGAACGGTAATGATGGCAAGGACAC AGTTAGTCTGATGGGTTCAGAGAATAGGATGACTGCTCTTTTAGGTGAAGAGTATTGGGTATTGCCTGGTGTGGCCACTGGCCATAGTGGAGAGGCGTAT GATAATATAAAGTCTAGGCGTGGTCGTGGCCGACCAAAGGGCTCTGGGAACAAGAAGAAAAATCTTGCAGGTGGTGGTAATCAGAAATTGGCTGGTGTAG TTATGTATGGTAATGATGGAGAGAATGCTGTTAGGTCGATGGGTTTAGGGAATGGGATGACTACTCTTATTGGAGAAAAACATAGAGCACTGACTGGTGA GTCCACTGGCCATAGTGAAGAGGGGGAAATTCCTAAGCGTAAGCCAGGTCGTCCAAAGGGGTCAAAGAACAAGAAAACTCTTGCAGGTTGTATTCAGGGA TTGCCTGGTGAAACCATGTGCGGTAATGATGCTGGTGAGAAAACACTGAGGCTAACTAGGATAGATAATGGTTGGGCAGCTCCTTTAGGCAAGGAAGTTA AGTTGGTGCCTTGTGAGGTCAATGGTGTTAGTAGAGATGGAAATGATACCATGAAGACAAATGTTAAGCATGACCAACCTAAGAGTCTGAAAATAAGGAA GGAGGGTGACGGAAATGAGGAAATCCAGTGCAAAATCAAGTGTAAAAGTGATGGTGAGGATAGTATTATTTGTCTAGCAGGTTCTGAGAGTGAAGGGAGT ATGCTTGAAGGTGAGGAAGATAGGATAATAGCAACTGAAGCTGCTGGTGGTAATGAAGCTGGCACTGCAAATCCCCAGTCTAAGATTGAGTGTGCTCAAC CTGAAGCTTCAAAGAGAAAGAAGCTAAGTATTGCTGCTAAAGAAGAAGAGAGACAGAATGGAGAATTTATGGGCAAAGACGATGGTGAAAGTAAAAGGCC AAACAATAAGCAAGTCAGACGAAAAGTCTTAAAGAGTAAGAGAACTATTCTGTTAGCTAAATCTTTTGACCGTATATTAAGGCAGAAGTATGGAATGAAG AAGGAAAGTGGGGAAGATTTGGGAATGGACAGGGATATTCTGGTTGAGCAAACTGGTCACTGGAGCAATATTAAGAAGAGGCCTAGGGGAAGGCCACCAA AGCACAACCGATCAGAAAATTCAAATTTACTAGGTGCCAACAAGAAAAACGAACAGAAGACCTTGATGTGCCACCAATGCTGCAGGAATAATAGGAGTGG TGTTGTCATTTGTTCTAATTGCAAAAGAAAGCGCTATTGCTATGAGTGCCTTGCGAAGTGGTACCCTAAGAGAACACACGAGGAGATAGAGATTGCATGC CCATTTTGTCGTGGTAATTGCAATTGCAGGGTATGCCTCAAGGAAGATGTAGTTGTGGTCGCTGGTGATGATAAAGCTGATGCAAATGCCAAATTGCAAA AGCTTCTTTACCTGCTACACAAGACTTTACCTCTCCTCAGGCATATTCAAAGGGAACAGAACTCTGAAATATATGTAGACTCCAGGATCCATGGTAGCCT ATTAACAGAAGAGCATGTAACAAAATCTTTACTTGACGATGATGATCGAGTATATTGTGACAATTGCAGTACATCTATTGTTAATTTCCACAGAAGCTGT CCCAATCCTGATTGTTCCTATGATCTCTGTCTCACTTGTTGTTCGGAACTCAGAATAGGATTTAAGCCTGGAGGTAATGAAGCAGAATCTTCTCACCTAC GATTTTTTGAAAGAGTAGACAGTCAAGGTGCGCTTGTTCATGACCAGATAAATGAAAATGGAAAAGGACTTGGTTGCAAGACTCAAGTGTCTGATTTGGA AAGTAAGTGCACAGCTGATATGTCATGCAAGTTTCCTGATTGGAGAGCAGAGAGTGATGGAAGGATTCCTTGCCCTCCTAAAGAACTGGGAGGCTGTGGT AACGAGATACTCACCTTGAGACGTATCTTTGATGCTAAATTCGTTGAAGAGATGATTAAGAGTGCAGAGGAACTTACTCTTAACTATCAGTCCCCAGATA TTAGACTTTGTGAAGAATGTTATTTGTGCCATCCTACCAGTTCCACTGAAAATGGATCTAAAGATTTTGCAGTGAGGAAAGCAGCTTATAGGGAGAACAG TGATGATAACTTTCTGTACTGCCCAAATGCACTTCAGTTGGGTGATGATGACTTTGAACATTTTCAATTGCATTGGATGAGAGGTGAACCTGTTATAGTT AGACATGCACTTGAAAGGACTTCTGGTCTGAGCTGGGAACCAATGGTCATGTGGAGGGCTTTTAAAGGTGCAGAAAAGATAATAAAAGAGGAAGCACACA GGGTTAAAGCCATTGATTGCCTGGATTGGTGCGAGGTTCAGGTTAATATTTTCCAGTTTTTCAAGGGCTATTTAGAGGGTCGTAGCTATAGGAATGGTTG GCCAGAGATGCTGAAGCTGAAGGATTGGCCCCCATCAAATTTCTTTGAAGAATGTTTGCCAAGGCATGGTGCTGAGTATGTTTCTATGCTCCCCTTCAGT GAGTATACCCATCCAAAATCTGGCATTCTGAATATGGCTACAAAGCTTCCTGCTGTTTTGAAGCCAGACTTGGGGCCTAAAACTTACATAGCATATGGAT TTGTGGAAGAACTTGGTAGAGGTGATTCAGTGACAAAACTGCATTGTGACATGTCTGATGCGGTCAATATACTTACTCATATGACAGAAGTGAAAGTTCC TCGATGGCAAAGCAAAATTATAAAAAAAATACAAAAGCAACATGAAGCTGAAGATATGAATCCGGTTTGTGGTGGGATACAGAAAGTGACTCGTAAGTCT GGAAGGAAGCCACGAAAAAGAAGGCGGAAAGTTGAGAAAATGGATCCTGAATTACCTAAAAAAGATGAAAATATCGAGAGTGACTCCTCACTAGAGCGGT TGTATGTCCAGGAACAGAAACTGGAAGAACAAAAAAGCATGTGCCAAGAGTTGGGGGAATTTTATAGCATTGTGTGTGGGATAAGATGTTCTTCAACTAA ATCTGAGGTGACTGCTGATACCAATTTGCAGCCAGTTGCAAAAATGAATGCAAGGGTGCAAAATTATGATACGAGCTCTGCTGATTTAAATGAAAGTGTG AACAGAGATTGTACTGAAGGAAACCACACCTCAGAACTTGTTTATGGTGGTGCTGTTTGGGACATTTTCCGTCGGCAGGATGTGCCCAAGTTAATTGAAT ACTTGAAGAGGCATCAGAAAGAATTTCGCCATGTCAGTAGCCTGCCTGTAAATACTGTTATTCATCCCATCCATGACCAAACCTTTTATCTAAGTGAGAA ACACAAAAGGCAGCTGAAGGAGGAGTTCAATGTTGAACCTTGGACATTTGAGCAGCACCTTGGTGAGGCTGTTTTCATACCTGCAGGATGTCCTCATCAA GTGAGGAATAGACAGTCATGCATAAAAGTGGCCCTTGATTTTGTATCCCCTGAGAATGTTCAAGAATGCATTCGGTTGACAGAGGAGTTTCGTTTGCTTC CAAAGACCCACAGAGCCAAGGAAGACAAATTGGAGGTGAAAAAGATGGCACTATATGCTGCCAGCGCTGCTGTAACTGAAGCCAAAAATCTGAATTCTTG GGTAACTGAAGCCAAAAATCTGACTTCTTGA
AA sequence Show only first row Show all	>Potri.015G012800.9 pacid=42775473 polypeptide=Potri.015G012800.9.p locus=Potri.015G012800 ID=Potri.015G012800.9.v4.1 annot-version=v4.1 MVDDDDGYRRCSRSAGKWRCRERAFSGKAYCEKHHLYSVERGLKRSMEKKSGNGGGVEVGSQKKKRQREGSEEDSGILAGEKEQKVSDHVGFGDQGVHDW FSGGNSDVLEWFDDVGAGNVGESFQLWQNEATARGNNGQVLGGEGFQDSFGGECGGTEVLGLDGKVFQVWDGEGFRLGESGLGASENGVVGLGDQGAPDL FCQVSAANVGNVGVGSGGGGIHGVFGEVNGKSGDITLSGESMEGLFGECKNGGMAASGEGVQCWCGEAGCASIDGEGIQGLFGETTCENGGEGIESGCHR NGGGDDVEDDGKTNKKEIFGVEAVGIDDSSEFGGDDNGGAEVSPVKRKRGRPKGLTKKKNDPRGQVKLGLGGDNVIGNGSAVGMIEMEMFSETSGVNGEG NENNPVEDKQILGAGECIERSVGNDIVRPKAKRGRPKGSGKKQKDVAPEEKQCLPGDFLGNNNAGIESVTPATLENGRTTLLCAEDDETPGGTETVTPKR RGRPKGSKNKNNGDTAGENQEMTGETKGCIGSVVWTPILMGVESETTIAGAEDREIPGEGTCANGKVEEIIAPKKRGRPKGSKKEEILAGDDREMPGETK DTTDCDNRTARSMQLESERTTLEGAKDKELPDEVTGGKGIITPNRRGRPKGSKNKKENLASGEAKVSVDSCDKTNMPRVLWNERITLLDEEENGGSHELP RGIVGYNESRDNKVRLAGCVNDMTCLGENDGAMADDNIDSSFGVNDKSKPKRKRGRPKNSKNKQKSLAGYRQQFPGDIMVSNDGADNKVRLMGFENWTTA TFDGYKALCSHATIEGADNKASLLDLGNGMAALVGEKARKLPSEATGVSGDGQEIIKPSLDQRVGSKNKPKNPAGDSWELPSDIVDRNGDAGNVIREVVL ENRMVVSSCEGHRVLSVEVTGHSREGNEIRKPRPRGRPKGSVKKKNLADGHQELPGEVMNGNDGKDTVSLMGSENRMTALLGEEYWVLPGVATGHSGEAY DNIKSRRGRGRPKGSGNKKKNLAGGGNQKLAGVVMYGNDGENAVRSMGLGNGMTTLIGEKHRALTGESTGHSEEGEIPKRKPGRPKGSKNKKTLAGCIQG LPGETMCGNDAGEKTLRLTRIDNGWAAPLGKEVKLVPCEVNGVSRDGNDTMKTNVKHDQPKSLKIRKEGDGNEEIQCKIKCKSDGEDSIICLAGSESEGS MLEGEEDRIIATEAAGGNEAGTANPQSKIECAQPEASKRKKLSIAAKEEERQNGEFMGKDDGESKRPNNKQVRRKVLKSKRTILLAKSFDRILRQKYGMK KESGEDLGMDRDILVEQTGHWSNIKKRPRGRPPKHNRSENSNLLGANKKNEQKTLMCHQCCRNNRSGVVICSNCKRKRYCYECLAKWYPKRTHEEIEIAC PFCRGNCNCRVCLKEDVVVVAGDDKADANAKLQKLLYLLHKTLPLLRHIQREQNSEIYVDSRIHGSLLTEEHVTKSLLDDDDRVYCDNCSTSIVNFHRSC PNPDCSYDLCLTCCSELRIGFKPGGNEAESSHLRFFERVDSQGALVHDQINENGKGLGCKTQVSDLESKCTADMSCKFPDWRAESDGRIPCPPKELGGCG NEILTLRRIFDAKFVEEMIKSAEELTLNYQSPDIRLCEECYLCHPTSSTENGSKDFAVRKAAYRENSDDNFLYCPNALQLGDDDFEHFQLHWMRGEPVIV RHALERTSGLSWEPMVMWRAFKGAEKIIKEEAHRVKAIDCLDWCEVQVNIFQFFKGYLEGRSYRNGWPEMLKLKDWPPSNFFEECLPRHGAEYVSMLPFS EYTHPKSGILNMATKLPAVLKPDLGPKTYIAYGFVEELGRGDSVTKLHCDMSDAVNILTHMTEVKVPRWQSKIIKKIQKQHEAEDMNPVCGGIQKVTRKS GRKPRKRRRKVEKMDPELPKKDENIESDSSLERLYVQEQKLEEQKSMCQELGEFYSIVCGIRCSSTKSEVTADTNLQPVAKMNARVQNYDTSSADLNESV NRDCTEGNHTSELVYGGAVWDIFRRQDVPKLIEYLKRHQKEFRHVSSLPVNTVIHPIHDQTFYLSEKHKRQLKEEFNVEPWTFEQHLGEAVFIPAGCPHQ VRNRQSCIKVALDFVSPENVQECIRLTEEFRLLPKTHRAKEDKLEVKKMALYAASAAVTEAKNLNSWVTEAKNLTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00990			Transcription factor jumonji (...		Potri.015G012800 [exp]	0	1
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	6.48	0.7802	Pt-ARF2.1
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	7.48	0.8488
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	8.00	0.8377
AT1G65440		GTB1	global transcription factor gr...		Potri.006G031900 [exp]	11.66	0.8327
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	17.32	0.8104
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	18.49	0.8205
					Potri.008G016200 [exp]	18.97	0.8119
AT5G55660			DEK domain-containing chromati...		Potri.001G367400 [exp]	19.26	0.8139
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	19.87	0.8261	SDG904
AT1G65440		GTB1	global transcription factor gr...		Potri.016G029200 [exp]	19.89	0.8110

Compare expression of checked genes

Potri.015G012800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.