Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24260 969 / 0 prolyl oligopeptidase family protein (.1) AT2G47390 60 / 7e-09 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014900 [exp] 1379 / 0 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1) Potri.002G196000 [exp] 64 / 3e-10 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.014G120600 [exp] 64 / 5e-10 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.005G247300 [exp] 46 / 0.0001 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 46 / 0.0001 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018107 [exp] 1159 / 0 AT5G24260 1031 / 0.0 prolyl oligopeptidase family protein (.1) Lus10022408 [exp] 1150 / 0 AT5G24260 1037 / 0.0 prolyl oligopeptidase family protein (.1) Lus10010007 [exp] 62 / 2e-09 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10039405 [exp] 61 / 5e-09 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10025026 [exp] 49 / 2e-05 AT2G47390 1339 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015363 [exp] 49 / 2e-05 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1) Lus10025027 [exp] 45 / 0.0002 AT2G47390 1330 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00930 [poplar] [flax] DPPIV_N Dipeptidyl peptidase IV (DPP IV) N-terminal region CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.015G013400.3 pacid=42775421 polypeptide=Potri.015G013400.3.p locus=Potri.015G013400 ID=Potri.015G013400.3.v4.1 annot-version=v4.1 ATGCAATCAGTTGATGAGAACGAGAGCGAGAACAAGAAATTGAAGCGTTTGAGATCATTAAGTAACAATATGCCTTTGACTGACAACACCACCCCACAAA ATGTTGAGGACAGCATTCTTTTTCCTATTGAAGAGATAGTGCAATCACCGTTGCCTGGATATGTGGCGCCGACTTCGATAGGTTTTAGTGCTGATGATAG TTTAGTTACTTGCTTATTTAGTCCTGATCACACCTTGAGTAGGAAGGTTTTTGCTTTTGATCTCAAGAATGGCAAGCAAGAATTGTTTTTTGGTCCCCCT GATGGCGGACTCGATGAGAGTAATATATCAGCGGAAGAGAAGCTGCGGAGGGAGAGGTTGAGAGAACGTGGGCTGGGAGTGACACGGTATGAATGGGTGA AGACAGGCTTGAAGAAGAAAGCAATTATGGTGCCATTGCCTGCAGGGATTTATTTACAGGAACTCTACTCTCCCAAACCCGAGCTCAAGCTTCCTAGCTC CTCATTATCACCTATTATCGATCCGCATATCTCTCCTGACGGTACCATGCTTGCTTATGTACGGGACAGTGAGCTGCATGTTCTAAATTTCTTGTTCAAT GAGTCCAAACAATTAACACATGGTGCTCAGGGAAATACAGTGACTCATGGCATTGCTGAATATATAGCTCAGGAGGAAATGGACCGGAAGAATGGTTACT GGTGGTCACTTGACAGCCAATTTATTGCATTTACACAAGTTGATTCATCTGAGATACCTCTTTTTAGAATTATGCACCAAGGCAAAAGCTCTGTTGGTTC AGAAGCACAGGAAGACCATCCTTATCCCTTTGCAGGAGCTTCAAATGTCAAAGTTCACCTCGGGGTAGTTTCTGTTCATGGTGGTTCTGTAACTTGGTTG GATCTTCTCTGTGGAGGAACAGAAAAACCAGATAACGAGGATGAATATTTGGCCAGAATCAATTGGATGCATGGAAATATTCTCATAGCTCAAGTTTTGA ACAGGTCTCATTCAAAATTAAAACTTATTAAGTTTGATATCAAGGCGGGGAGAAAAGAAGTCATATATGTGGAAGAACAATTCCCATGGATTAATTTACA TGACTGCTTCACTCCTCTGGACAAAGGAATCACTAAATATTCTGAAGGATTCATTTGGGCGAGTGAAAAGACAGGATTTAGACATTTGTATCTGCATGAT GCAAATGGGACATGCTTAGGACCAATTACTGAAGGTGACTGGATGGTTGAGCAAATTGCTGGTGTAAATGAGGCTGCTGGAATGATATATTTTACTGCAA CTCGAGATGGGCCATTGGAATCGCATCTTTATCGTGCTAAACTGTTCCCAGATGAAAAAAACGCCTTGCAGGCTCCAGTGAGATTAACAAATGGTAAGGG GAAACACTCGGTTGTGCTTGATCACCACTTGCAGAATTTTGTTGATATCCACGATTCCCTCGATTGTCCCCCTAGAGTTTTGCTCTGCTCCTTGATCGAT GGAAGAGAAATTATGCCTCTGTTTGAACAGGCTTTCACCATTCCAAGATTTAAAAGGCTGGAACTTGAGCCTCCAAAGATAGTTCAGATACAGGCAAACG ATGGGACCATATTGTATGGGGCTTTATATGAGCCTGACCCAACTAGATTTGGACCGCCACCATACAAAACCTTGATCAGTGTGTATGGTGGCCCCAGTGT ACAGTATGTATGTGATTCTTGGATAAGTACAGTTGACATGAGAGCACAATATCTTCGGAGCAAAGGCATCTTAGTGTGGAAGTTGGATAACAGAGGAAGT GCTCGTCGTGGGCTAAAGTTTGAAGGTGCTCTGAAAGGAAATCCCGGCCGCTTTGATGCTGAGGATCAGCTTACTGGAGCTGAATGGCTCATTAAACAAG GACTGGCAAAAGCTGGTCATATTGGGTTGTATGGATGGAGTTATGGGGGATATATGTCAGCTATGATCTTGGCAAGGTTCCCTGATGTCTTCTGTTGTGC AGTCTCTGGTGCACCTGTAACCTCCTGGGATGGATATGACACATTTTATACTGAGAAATACATGGGATTGCCTTATGAGAATCCAACAGGCTATGAGTAC GGCTCTGTGATGCATCATGTGCACAAGTTAAAAGGGAGGTTGTTACTGGTGCATGGGATGATTGATGAAAATGTGCATTTTAGACACACTGCAAGGCTTG TCAATGCACTCGTGGCAGCTGGAAAACCCTATGAACTATTAATTTTTCCAGACGAACGACACATGCCCCGTCGGCATACAGACCGAATTTACATGGAAGA GAGAATTTGGGAGTTCTTCGAGAGAAATCTGTGA
AA sequence Show only first row Show all	>Potri.015G013400.3 pacid=42775421 polypeptide=Potri.015G013400.3.p locus=Potri.015G013400 ID=Potri.015G013400.3.v4.1 annot-version=v4.1 MQSVDENESENKKLKRLRSLSNNMPLTDNTTPQNVEDSILFPIEEIVQSPLPGYVAPTSIGFSADDSLVTCLFSPDHTLSRKVFAFDLKNGKQELFFGPP DGGLDESNISAEEKLRRERLRERGLGVTRYEWVKTGLKKKAIMVPLPAGIYLQELYSPKPELKLPSSSLSPIIDPHISPDGTMLAYVRDSELHVLNFLFN ESKQLTHGAQGNTVTHGIAEYIAQEEMDRKNGYWWSLDSQFIAFTQVDSSEIPLFRIMHQGKSSVGSEAQEDHPYPFAGASNVKVHLGVVSVHGGSVTWL DLLCGGTEKPDNEDEYLARINWMHGNILIAQVLNRSHSKLKLIKFDIKAGRKEVIYVEEQFPWINLHDCFTPLDKGITKYSEGFIWASEKTGFRHLYLHD ANGTCLGPITEGDWMVEQIAGVNEAAGMIYFTATRDGPLESHLYRAKLFPDEKNALQAPVRLTNGKGKHSVVLDHHLQNFVDIHDSLDCPPRVLLCSLID GREIMPLFEQAFTIPRFKRLELEPPKIVQIQANDGTILYGALYEPDPTRFGPPPYKTLISVYGGPSVQYVCDSWISTVDMRAQYLRSKGILVWKLDNRGS ARRGLKFEGALKGNPGRFDAEDQLTGAEWLIKQGLAKAGHIGLYGWSYGGYMSAMILARFPDVFCCAVSGAPVTSWDGYDTFYTEKYMGLPYENPTGYEY GSVMHHVHKLKGRLLLVHGMIDENVHFRHTARLVNALVAAGKPYELLIFPDERHMPRRHTDRIYMEERIWEFFERNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24260			prolyl oligopeptidase family p...		Potri.015G013400 [exp]	0	1
					Potri.013G156300 [exp]	5.19	0.8614
AT5G58375			Methyltransferase-related prot...		Potri.013G155800 [exp]	21.90	0.8478
AT3G03210			unknown protein		Potri.017G139800 [exp]	29.66	0.8546
AT5G57830			Protein of unknown function, D...		Potri.018G103500 [exp]	30.65	0.7754
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Potri.014G103500 [exp]	35.88	0.8455
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	43.16	0.8451
AT3G51580			unknown protein		Potri.006G108400 [exp]	47.18	0.8382
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	50.29	0.8410
AT3G05545			RING/U-box superfamily protein...		Potri.005G024700 [exp]	53.02	0.8188
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Potri.006G026900 [exp]	54.79	0.8403

Compare expression of checked genes

Potri.015G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.