Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08750 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT3G23880 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT3G10430 68 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT4G12560 68 / 3e-12 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT1G11620 67 / 5e-12 F-box and associated interaction domains-containing protein (.1) AT1G47790 65 / 2e-11 F-box and associated interaction domains-containing protein (.1) AT1G32420 63 / 7e-11 F-box and associated interaction domains-containing protein (.1) AT5G47300 63 / 8e-11 F-box and associated interaction domains-containing protein (.1) AT3G22730 61 / 4e-10 F-box and associated interaction domains-containing protein (.1) AT3G17490 61 / 4e-10 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014700 [exp] 230 / 5e-72 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.012G014300 [exp] 135 / 9e-36 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.012G099733 [exp] 119 / 4e-30 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.015G013800 [exp] 118 / 8e-30 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.018G007900 [exp] 96 / 8e-22 AT2G04920 63 / 1e-10 F-box and associated interaction domains-containing protein (.1) Potri.017G058900 [exp] 96 / 9e-22 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.010G154700 [exp] 96 / 1e-21 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 96 / 1e-21 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.005G114900 [exp] 95 / 3e-21 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018106 [exp] 108 / 3e-26 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10007040 [exp] 93 / 1e-20 AT3G06240 86 / 4e-18 F-box family protein (.1) Lus10008871 [exp] 83 / 2e-17 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 82 / 8e-17 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 80 / 3e-16 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10013872 [exp] 79 / 4e-16 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10006687 [exp] 77 / 1e-15 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10011015 [exp] 77 / 4e-15 AT3G06240 94 / 7e-21 F-box family protein (.1) Lus10036065 [exp] 74 / 4e-14 AT3G23880 55 / 4e-08 F-box and associated interaction domains-containing protein (.1) Lus10039593 [exp] 71 / 5e-14 AT4G12560 75 / 9e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0162 [poplar] [flax] FBA PF07734 [poplar] [flax] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Potri.015G013500.1 pacid=42776203 polypeptide=Potri.015G013500.1.p locus=Potri.015G013500 ID=Potri.015G013500.1.v4.1 annot-version=v4.1 ATGGCGGCTAGCATCTGCTCCTCCTTCAACAATGACATGGTCATAGATATTCTTTCCAGACTACCGGTCAAAACCCTCCTTCGTTTCAAATCTGTTTCTA AACCCATGCTCTCCGTCATCACCAACCCTAGATTTATCACCTCCCATCTACACCAATCCACCAAAAACTCCTCCCTCGTATTTCATTTTTCTCACGATGA GTTCCCCATATCAATGCTCTACTACACTGAACCTACCACTCTCCGTGTCGTGCATATACCACCATCTATGAAGGATCATTCTCTCAAACCACGTATACGT ATTAAGGGTTCCTGTGGCGGTTTGCTATTCATGGAAATCTATTTTGGTTGCTGTATGTTTCATTATGGTTTTTGGAATCCTGCTACCAGACAGTTCAAGA AAGTTACAGGGCCCCAGCAGTGTATAAATCTTCTTGCTGAAGGGTTTGGCTATGGCAGCAAGATTAATGACTATAAGTTAGTCAGAATTGGGTATTTCTT GCACCCTCGCACTCTAATAACTCGTTACGATCGAAGGCGAGTGGATTCTGTTGTTCGAGCTTTGGTGTTCTCTTGGAAAACAGATTCTTGGAGAACAGTT GAAGATGGTGCGCTGCTTGGCGGTCGCTTTAGCGATGCTGTTGCTGTGAAGGGTGACTTGTATTGGAAGGTAAGTGGAGTAGAAAATTTGGCCAACGAAG GAGTCCTTGCATTTGATTCTGACACTGATATGTTTAGAAGGATAGAGCTGCCGGGTTTGAATCAATCGAGTCCGAACTATTCAATGACAATCACTGGATT CAAGGATTCTCTCGGACTCTTTGTATTTCTCGAAGGTAGTTCAAACTCAAGTTTTGATCTATGGGTGCTGAATGAGAGTAGAATGGGTGGTAATATCAAG AGCTGGAGTAAGTTGCTTACTGTTGGGTCAATGTCAAGAATTGGATGGCCAATATCGGCATGGAGAGGCAAAATAATCCTGAAGAGTCCGAATGAAAAAG ATGGTTTTTTCTTGTATGATCCAATTAGCCAAGAAGTCATTGATGTTCCAATATCAAGTTCTGGAGCTTATGATTATGCGGAGACTCTAGCTTCAGTTGA TGGAACATCCAATCTTATGCTGGAGGATGCCCCTCTCTGA
AA sequence Show only first row Show all	>Potri.015G013500.1 pacid=42776203 polypeptide=Potri.015G013500.1.p locus=Potri.015G013500 ID=Potri.015G013500.1.v4.1 annot-version=v4.1 MAASICSSFNNDMVIDILSRLPVKTLLRFKSVSKPMLSVITNPRFITSHLHQSTKNSSLVFHFSHDEFPISMLYYTEPTTLRVVHIPPSMKDHSLKPRIR IKGSCGGLLFMEIYFGCCMFHYGFWNPATRQFKKVTGPQQCINLLAEGFGYGSKINDYKLVRIGYFLHPRTLITRYDRRRVDSVVRALVFSWKTDSWRTV EDGALLGGRFSDAVAVKGDLYWKVSGVENLANEGVLAFDSDTDMFRRIELPGLNQSSPNYSMTITGFKDSLGLFVFLEGSSNSSFDLWVLNESRMGGNIK SWSKLLTVGSMSRIGWPISAWRGKIILKSPNEKDGFFLYDPISQEVIDVPISSSGAYDYAETLASVDGTSNLMLEDAPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10190			F-box and associated interacti...		Potri.015G013500 [exp]	0	1
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G329800 [exp]	8.48	0.8815
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Potri.001G335800 [exp]	11.13	0.9230	GAPDH.2
AT1G50060			CAP (Cysteine-rich secretory p...		Potri.009G083600 [exp]	21.56	0.9004
AT5G56200	C2H2ZnF		C2H2 type zinc finger transcri...		Potri.001G224600 [exp]	21.90	0.8424
					Potri.012G082350 [exp]	30.59	0.8997
					Potri.016G138166 [exp]	35.32	0.8997
					Potri.006G062050 [exp]	41.42	0.8997
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	42.95	0.7713
AT5G05800			unknown protein		Potri.008G217500 [exp]	43.26	0.8997
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	49.09	0.7439

Compare expression of checked genes

Potri.015G013500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.