Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24240 749 / 0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT2G46500 706 / 0 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G64460 426 / 1e-146 Protein kinase superfamily protein (.1) AT1G13640 227 / 7e-66 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT1G26270 224 / 6e-65 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G03890 225 / 7e-65 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT2G40850 213 / 5e-61 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT3G56600 205 / 1e-58 Protein kinase superfamily protein (.1.2) AT1G64470 182 / 2e-53 Ubiquitin-like superfamily protein (.1) AT1G27570 109 / 9e-25 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014600 [exp] 1019 / 0 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 740 / 0 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.001G090300 [exp] 711 / 0 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.010G137400 [exp] 232 / 2e-67 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 229 / 1e-66 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 216 / 3e-62 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.017G101500 [exp] 208 / 4e-59 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.002G171400 [exp] 76 / 8e-17 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1) Potri.011G026600 [exp] 78 / 4e-16 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022411 [exp] 838 / 0 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10018104 [exp] 793 / 0 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10001817 [exp] 661 / 0 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 607 / 0 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 465 / 2e-161 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 461 / 7e-160 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10019197 [exp] 224 / 3e-64 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 221 / 2e-63 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 212 / 3e-60 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018367 [exp] 78 / 5e-16 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.015G013600.2 pacid=42775819 polypeptide=Potri.015G013600.2.p locus=Potri.015G013600 ID=Potri.015G013600.2.v4.1 annot-version=v4.1 ATGTCGATGGCTAGTGTAGCTCTTAGTCCTGTGCATGATGAGTCTTTAGATTCTCATCGCAATTTCCCTTGGCTGTGTGGTCTGCGCTCTAGTGACTCTA TTGGAATTTTTCTTGTTGTTGGGAGATCAATCATTCCATTGCAAGTTATGGAGTCAGATTCGATTGCTTCGGTGAAGCTGAGGATTCAAGCTTCCCAAGG TTTTTTTGTGAAGAAGCAAAAATTGGTTTTTGAGGGGAGGGAACTAGCACGGGGCAATTCTCAAGTGAGAGATTATGGTGTTGCAGATGGAAAAGTACTG CATTTGGTGGTCAGGCTTTCGAATCTCCAAGCTATAACAGTTGGGACTGTTTGTGGGAAAGTGTACAAGTTTCGTGTTGATAGGGGTAGAAGTGTGGGCT ATGTTAAGAAGCAGATAGCTAAGAGAGGGAAAGGTTTAGCTCTTGTTGATCAAGAACTGGTATGTGATGGTGAGGAGCTTGAAGACCAGAGGCTCATTAC TGATATTTGCAAAGGTAATGATGCTGTGATTCACCTGCTTATCCGCAAATCAGCCAAATTAAGGGGAAAACCTGTTGAGAAAGATTTTGAATTGTCTATT GAGGCATTGGATTTGAATGAGAAGAAAGCTGACTCTGTAGGAGAGCACCAACAGGGTGCTTTATCTATGGGATATAGGGTTATAGAGAGGAAACCACTAT TACGAGAATTCCTTCTGGAACCTCTAATTGTCAATTCCAAAATCCAACTGCCATTAGTTATCAGAGAGCTATTCAAGTCTACTTTCAATGGGCTGGATAG GGGCAATGAACCAATTCGATCTTCTGAGGGATCTGGGGGAGCTTATTTCATGCAAGATTCATCTGGTCAGAAATATGTTTCTATCTTTAAACCAATTGAT GAGGAGCCAATGGCTGTAAATAATCCTCAGGGGCTACCCTTGTCAATTGATGGTGAGGGATTGAAGAAAGGCACAAGAGTAGGAGAAGGTGCACTGCGGG AAGTTGCAGCTTACATCTTGGATCATCCAAAGAGTGGACCACGCACATTTTCTGGTGAGGAGAGAGGCTTTGCTGGGGTTCCACCCACAGCAATGGTCAA GTGCCTCCACAGAGGATTCAATCATCCCGATGGTTATGAATTTGATTCCAAGAATATCAAAATTGGTTCATTGCAGATGTTCATGGAGAATAATGGAAGT TGTGAAGATAGGGGCCCTAGTTCTTTCCCTGTTGCTGAGGTGCACAAAATCTCTGTGTTGGACATTAGATTGGCTAATGCAGATAGGCATGCTGGGAACA TATTGGTCAGTAAAGATAGTGAACATGGCCAGATTGTGCTTATTCCAATTGATCATGGCTACTGCTTTCCTACAAATTTTGAGGATTGCACATTTGACTG GCTTTACTGGCCTCAAGCTCAACAACCGTACTCTCATGACACTGTTGAGTACATCAAAGCTCTGGATGCTGAGCAGGATATTGCACTTCTCAGGTTTCAC GGGTGGGACATGCCACCTGAGTGTGCTCGCACCCTCTGTATCTCCACAATGCTCCTGAAGAAAGGAGCAGAGAGAGGTCTTACTCCCTTTGCCATTGGAA GCATCATGTGCAGGGAAACACTGAGGAAGGAATCTGTGATTGAGCAGATTGTGCAAGAAGCTCAGGATGCTGTTCTCCCAGGAAGCGGCACGGACTCTTT CAGTAAATGGGTGGGTAGCACAAGAATGGGTAGATTGTTCAAGGATAATGGGCAACTTGACAGGATAAGACCATCCAATCACAGCTGGCCTGGCACAGCG TGCAGGTTTGTTGACTCAAGTCAAAACAACACAAAGCCAAAAACCTACTCAGCACTCTTGACATGA
AA sequence Show only first row Show all	>Potri.015G013600.2 pacid=42775819 polypeptide=Potri.015G013600.2.p locus=Potri.015G013600 ID=Potri.015G013600.2.v4.1 annot-version=v4.1 MSMASVALSPVHDESLDSHRNFPWLCGLRSSDSIGIFLVVGRSIIPLQVMESDSIASVKLRIQASQGFFVKKQKLVFEGRELARGNSQVRDYGVADGKVL HLVVRLSNLQAITVGTVCGKVYKFRVDRGRSVGYVKKQIAKRGKGLALVDQELVCDGEELEDQRLITDICKGNDAVIHLLIRKSAKLRGKPVEKDFELSI EALDLNEKKADSVGEHQQGALSMGYRVIERKPLLREFLLEPLIVNSKIQLPLVIRELFKSTFNGLDRGNEPIRSSEGSGGAYFMQDSSGQKYVSIFKPID EEPMAVNNPQGLPLSIDGEGLKKGTRVGEGALREVAAYILDHPKSGPRTFSGEERGFAGVPPTAMVKCLHRGFNHPDGYEFDSKNIKIGSLQMFMENNGS CEDRGPSSFPVAEVHKISVLDIRLANADRHAGNILVSKDSEHGQIVLIPIDHGYCFPTNFEDCTFDWLYWPQAQQPYSHDTVEYIKALDAEQDIALLRFH GWDMPPECARTLCISTMLLKKGAERGLTPFAIGSIMCRETLRKESVIEQIVQEAQDAVLPGSGTDSFSKWVGSTRMGRLFKDNGQLDRIRPSNHSWPGTA CRFVDSSQNNTKPKTYSALLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	0	1
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085700 [exp]	1.00	0.8945
AT2G26970			Polynucleotidyl transferase, r...		Potri.001G222300 [exp]	3.16	0.8490
					Potri.001G371500 [exp]	4.47	0.8651
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Potri.001G217800 [exp]	4.58	0.8584
AT5G25520			SPOC domain / Transcription el...		Potri.018G034500 [exp]	8.48	0.8425
AT1G32260			unknown protein		Potri.003G095600 [exp]	8.48	0.8527
AT3G61770			Acid phosphatase/vanadium-depe...		Potri.002G171300 [exp]	9.48	0.8459
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	9.89	0.8452
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Potri.012G017600 [exp]	10.39	0.8010	BIP.3
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	10.95	0.8392

Compare expression of checked genes

Potri.015G013600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.