Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PME2.12
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49220 805 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 775 / 0 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 447 / 1e-150 ATPME3 pectin methylesterase 3 (.1) AT3G43270 434 / 1e-146 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 425 / 4e-143 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT1G53830 427 / 5e-143 ATPME2 pectin methylesterase 2 (.1) AT1G11580 418 / 6e-140 ATPMEPCRA methylesterase PCR A (.1) AT3G05620 413 / 4e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 398 / 2e-132 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G43050 397 / 3e-132 ATPMEPCRD, PME16 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014500 [exp] 989 / 0 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 467 / 5e-159 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 458 / 3e-155 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.005G022700 [exp] 453 / 7e-154 AT3G05620 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 445 / 3e-150 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.002G145500 [exp] 442 / 7e-150 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 438 / 7e-148 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.011G135000 [exp] 436 / 4e-147 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.013G013200 [exp] 431 / 2e-145 AT3G05620 702 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018103 [exp] 788 / 0 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10022412 [exp] 764 / 0 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 425 / 7e-143 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 426 / 8e-143 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10029868 [exp] 425 / 9e-143 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 416 / 4e-139 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 414 / 9e-139 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 412 / 7e-138 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 409 / 1e-137 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003933 [exp] 412 / 3e-137 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.015G013700.3 pacid=42776641 polypeptide=Potri.015G013700.3.p locus=Potri.015G013700 ID=Potri.015G013700.3.v4.1 annot-version=v4.1 ATGGATTATGGGAGGCTCGGGCCAACAGAATCCGATCCGGGAGAAGGATCCGGTACTTCATTTAACATCAACGAGCCACAACTTGCCACGCCACGGGTTT CCCCAACGAGAAAAAAGAGAATCATCTTCCTTGCCATCTTCTCCATCGCATTGATAGCTGCTTCGGCCGTCTCGGCCGTGCTCCTCCTCGGGATTCGGAC CAAGGCATCGGGTCAGCCCGACCCGAGCAGTCTTACTCACCGGAAACCGACCCAGGCCATCTCCAAGACCTGCAGCAAAACTCGCTTCCCTAATCTCTGT GTCAGCTCGCTCCTCGACTTCCCCGGCTCAGTCAGTGCGTCCGAGTCAGACTTGGTTCACATTTCCTTCAACATGACTCTGCAACACTTCAGCAAAGCTC TGTACCTATCCTCGGCAATCTCCTATGTCAATATGGAGACACGTGTACGGTCAGCATTTGATGACTGCCTCGAGCTACTGGATGACTCCATAGACGCTCT CTCTCGCTCTCTTTCCACCGTCGCACCATCCCACGGCGGGGGAACTGGTGGCGGATCGCCGGCTGATGTAGTCACGTGGCTGAGCGCGGCGTTGACGAAC CAGGACACATGCTCGGAGGGATTCGATGGAGTTAACGGAGCTGTTAAGAATCAGATGACGGGGAGGTTGAAGGATTTGACGGAGCTGGTCAGTAATTGTT TGGCAATATTCTCATCGGCAAATGGAGACGACTTCTCAGGAGTGCCGGTACAGAATAAGAGGAGATTACTGACGGAGAATGAAGACATATCGTATGAGGA GAATTTCCCGAGATGGTTAGGGAGGAGAGACAGGAAATTACTGGATGTGCCAGTACCGGCGATACATGCCGATATTATCGTGTCGGGAGATGGGAATGGA ACGTGCAAGACAATATCCGAGGCGATAAAAAAGGCGCCTGAGTATAGTACTCGGCGTACTGTAATTTACGTGAGGGCAGGAAGGTACGAAGAGAATAACT TGAAAGTTGGGAGGAAGAAATGGAATTTAATGTTCATCGGAGATGGGAAGGGAAAGACTATAATCTCAGGAGGCAAGAGTGTTTTTAACAACCTTACCAC ATTCCATACAGCATCCTTTGCTGCAACAGGAGCTGGTTTTATTGCTCGAGACATGACATTTGAGAACTGGGCGGGTCCAGCCAAGCACCAAGCAGTGGCT CTTCGAGTCGGTGCAGACCATGCTGTGGTCTACAGGTGCAACATCATTGGCTACCAAGACACCCTTTATGTGCATTCAAATCGCCAATTCTTCAGGGAAT GTGACATCTATGGAACTGTAGATTTCATATTTGGCAATGCTGCAGTTGTGTTTCAGAACTGTAGCATATACGCCAGGAAACCAATGGCCTTCCAAAAAAA CACCATCACTGCCCAAAATCGCAAGGACCCTAATCAAAATACAGGCATATCAATCCACGCTTGCAGGATCCTTGCCACTTCAGACCTCACACCGTTGAAA GGCAGCTTCCCGACATTTCTCGGCCGTCCATGGAAGCTCTACTCTAGAACTGTGTACATGTTATCATACATAGGCGATCATGTTCATCCAAGAGGGTGGC TAGAATGGAACACAACATTTGCACTCGACACATTATACTATGGTGAATACATGAATTACGGACCCGGTGGGGCGGTCGGGCAAAGGGTTAAATGGCCTGG GTACCGGGTCGTTACATCGACCATCGAGGCAAGTAAATTCACCGTGGCACAGTTCATTTATGGATCATCTTGGTTGCCTTCTACCGGGGTGTCATTTTTA GCTGGTCTCTCACTTTAA
AA sequence Show only first row Show all	>Potri.015G013700.3 pacid=42776641 polypeptide=Potri.015G013700.3.p locus=Potri.015G013700 ID=Potri.015G013700.3.v4.1 annot-version=v4.1 MDYGRLGPTESDPGEGSGTSFNINEPQLATPRVSPTRKKRIIFLAIFSIALIAASAVSAVLLLGIRTKASGQPDPSSLTHRKPTQAISKTCSKTRFPNLC VSSLLDFPGSVSASESDLVHISFNMTLQHFSKALYLSSAISYVNMETRVRSAFDDCLELLDDSIDALSRSLSTVAPSHGGGTGGGSPADVVTWLSAALTN QDTCSEGFDGVNGAVKNQMTGRLKDLTELVSNCLAIFSSANGDDFSGVPVQNKRRLLTENEDISYEENFPRWLGRRDRKLLDVPVPAIHADIIVSGDGNG TCKTISEAIKKAPEYSTRRTVIYVRAGRYEENNLKVGRKKWNLMFIGDGKGKTIISGGKSVFNNLTTFHTASFAATGAGFIARDMTFENWAGPAKHQAVA LRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQNCSIYARKPMAFQKNTITAQNRKDPNQNTGISIHACRILATSDLTPLK GSFPTFLGRPWKLYSRTVYMLSYIGDHVHPRGWLEWNTTFALDTLYYGEYMNYGPGGAVGQRVKWPGYRVVTSTIEASKFTVAQFIYGSSWLPSTGVSFL AGLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49220			Plant invertase/pectin methyle...		Potri.015G013700 [exp]	0	1	PME2.12
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.009G086700 [exp]	1.00	0.7976
					Potri.010G001200 [exp]	5.29	0.7820
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.008G171700 [exp]	8.30	0.7853
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.009G072800 [exp]	9.16	0.7414
AT3G18490			Eukaryotic aspartyl protease f...		Potri.015G051800 [exp]	9.27	0.7879
AT4G38280			unknown protein		Potri.009G166100 [exp]	10.58	0.6858
AT1G25510			Eukaryotic aspartyl protease f...		Potri.010G128200 [exp]	12.00	0.7558
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	13.96	0.7726
AT2G26870		NPC2	non-specific phospholipase C2 ...		Potri.001G275500 [exp]	14.69	0.7714
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	15.19	0.7464

Compare expression of checked genes

Potri.015G013700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.