Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 105 / 6e-25 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 100 / 4e-23 F-box family protein (.1) AT3G16210 96 / 5e-22 F-box family protein (.1) AT3G23880 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) AT3G17490 84 / 8e-18 F-box and associated interaction domains-containing protein (.1) AT3G17280 77 / 4e-15 F-box and associated interaction domains-containing protein (.1) AT3G52320 74 / 3e-14 F-box and associated interaction domains-containing protein (.1) AT1G32420 73 / 3e-14 F-box and associated interaction domains-containing protein (.1) AT3G25460 72 / 1e-13 F-box and associated interaction domains-containing protein (.1) AT3G10430 72 / 2e-13 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014300 [exp] 607 / 0 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.011G121200 [exp] 127 / 4e-33 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014700 [exp] 126 / 2e-32 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.015G013500 [exp] 122 / 3e-31 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.006G013000 [exp] 114 / 4e-28 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 112 / 1e-27 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G318300 [exp] 110 / 3e-27 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.010G207500 [exp] 109 / 2e-26 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 107 / 5e-26 AT3G06240 142 / 3e-38 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039024 [exp] 110 / 1e-26 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 105 / 6e-25 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 104 / 9e-25 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10013873 [exp] 103 / 2e-24 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10031020 [exp] 103 / 2e-24 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10018106 [exp] 102 / 4e-24 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10008871 [exp] 102 / 4e-24 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10026587 [exp] 103 / 5e-24 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10008870 [exp] 99 / 1e-22 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10006687 [exp] 94 / 1e-21 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G013800.1 pacid=42775430 polypeptide=Potri.015G013800.1.p locus=Potri.015G013800 ID=Potri.015G013800.1.v4.1 annot-version=v4.1 ATGAGAAGCAAGCGAAGATCAATGGATAAAAAAACCACTTTACCCCAAGAAACCCTAACTGACATCCTATCGAGGCTCCCCATCAAATCTTTAACCCGTT TCGAATCCGTTTCTAAACCCTTTTCTGCTCTGATCAACTCCCCTGATTTCATCTCCGCCCATCTCCACCGTTCTTCTCGACATTTCACCTTTTTTATTCG CCACTTTCATAACCCATCCGGGTCTAACTTCTCTTTTTCACTGACCAATAACCAACCCATTGATGTTGAGATTCCTCTTTTGGGCTCCTTAATTAGGTTC CCAAAAATTGTTGGTTCTAGCAATGGTCTTGTTTGTCTTGATATCTCTTCTTGTTATGCGAGGGGGTTTGTTTTGTGGAATATTGCTAGGAAGCAGTATT CGTGTCTTCCTAGTCCAATAATCAGTGATTCTCGTGGGCCCTTTTGGATGGTCTCAACTGGGTTTGGATTTGATCGGGAAAAGAATGATTACAAAGTTGT GAGGATTGTGGGTTTCGCCTGCGAAAAGGGTGAATCACCTGTTGTAATGGTTGAGGTTTTTTCGTGGCGGACTGGTTGCTGGAAAGTGATTGATGGAAGA GCGATTGGGGCTTGTGTTATTCATGAAGGACACAACGGCGTGGTTATTAATGGAGGATTGCATTGGTTGGGTAACAGTGCTGGAAAATCAGGTGGTATTC AGAAGTTTATACTGTCATTCGATTTGAATACTGAAGAGTTTAGGAAGATACCAACACCTGAGTTTTCCGCCGGAGTTTGTGTTAAAATTATGGGGTTTAA AGGGTTACTTGCACTGGCATATTATCCTTCAAAGGGTCTGGTTGGAAGACCTGCTGCGACCGATCGAGTTGAGATATGTGTATGGGATGATTATGGTGGT GCTGATGGTAAGTATTGGACTAAACTGAATTCTCTTCAATTAAATGCTCTTGGATACCCTGTTGGTGTTACAAATGAGACTGGATTGATAATGAGGAAAT TGGATGGACAGTTTACTCAATTTTTCTTGTGTGATCCAAGTAATCAAAATTACAGAAGGCTGCATATTTGTGAAGCTACCTACTCATGTGACATTCACAG TTATGTGGAAAGTTTAGTTCCAGTGAGTGCAGGACATGATCATCGGGTTATAGAAGAGGAGGTGCTTAGTGAGGTCTAA
AA sequence Show only first row Show all	>Potri.015G013800.1 pacid=42775430 polypeptide=Potri.015G013800.1.p locus=Potri.015G013800 ID=Potri.015G013800.1.v4.1 annot-version=v4.1 MRSKRRSMDKKTTLPQETLTDILSRLPIKSLTRFESVSKPFSALINSPDFISAHLHRSSRHFTFFIRHFHNPSGSNFSFSLTNNQPIDVEIPLLGSLIRF PKIVGSSNGLVCLDISSCYARGFVLWNIARKQYSCLPSPIISDSRGPFWMVSTGFGFDREKNDYKVVRIVGFACEKGESPVVMVEVFSWRTGCWKVIDGR AIGACVIHEGHNGVVINGGLHWLGNSAGKSGGIQKFILSFDLNTEEFRKIPTPEFSAGVCVKIMGFKGLLALAYYPSKGLVGRPAATDRVEICVWDDYGG ADGKYWTKLNSLQLNALGYPVGVTNETGLIMRKLDGQFTQFFLCDPSNQNYRRLHICEATYSCDIHSYVESLVPVSAGHDHRVIEEEVLSEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.015G013800 [exp]	0	1
AT3G06200			P-loop containing nucleoside t...		Potri.010G029400 [exp]	3.60	0.9418
AT1G15710			prephenate dehydrogenase famil...		Potri.001G201100 [exp]	6.16	0.9275
AT3G53580			diaminopimelate epimerase fami...		Potri.006G102700 [exp]	11.40	0.8996
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.005G026600 [exp]	12.72	0.8593
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	13.41	0.8807
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.004G112800 [exp]	15.81	0.9076	Pt-NEMDH.2
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	16.15	0.9130
AT5G52810			NAD(P)-binding Rossmann-fold s...		Potri.004G072500 [exp]	17.66	0.9048
AT5G39410			Saccharopine dehydrogenase (....		Potri.004G126100 [exp]	17.74	0.8906
AT3G06200			P-loop containing nucleoside t...		Potri.008G200600 [exp]	18.43	0.9118

Compare expression of checked genes

Potri.015G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.