Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24850 73 / 2e-14 B3 Domain of unknown function (DUF313) (.1) AT5G24050 72 / 4e-14 B3 Domain of unknown function (DUF313) (.1) AT1G05920 70 / 2e-13 B3 Domain of unknown function (DUF313) (.1) AT2G24670 63 / 3e-11 B3 Domain of unknown function (DUF313) (.1) AT3G49610 62 / 7e-11 B3 Domain of unknown function (DUF313) (.1) AT1G32030 61 / 2e-10 B3 Domain of unknown function (DUF313) (.1) AT2G27410 59 / 4e-10 B3 Domain of unknown function (DUF313) (.1) AT2G31720 57 / 4e-09 B3 Domain of unknown function (DUF313) (.1) AT5G38490 57 / 7e-09 B3 Domain of unknown function (DUF313) (.1) AT5G38500 54 / 5e-08 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G014700 [exp] 531 / 0 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 75 / 5e-16 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 69 / 7e-13 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.011G139000 [exp] 57 / 5e-09 AT2G32645 67 / 6e-13 Domain of unknown function (DUF313) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038802 [exp] 77 / 4e-16 AT3G24850 69 / 1e-13 Domain of unknown function (DUF313) (.1) Lus10000815 [exp] 69 / 9e-13 AT2G27410 68 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 65 / 2e-11 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 64 / 4e-11 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 61 / 3e-10 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 60 / 7e-10 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 58 / 7e-10 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 58 / 3e-09 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 54 / 1e-08 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 54 / 3e-08 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF03754 [poplar] [flax] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Potri.015G014200.1 pacid=42775389 polypeptide=Potri.015G014200.1.p locus=Potri.015G014200 ID=Potri.015G014200.1.v4.1 annot-version=v4.1 ATGAAAAACATTGATTCTTCAACGTCCACAGTCGAAGAACGCAAGAAGGAAAGCGAGGAGGAGGTGGATGTTTTGTTTGTGACTGAAAAGGATTTGAAGG ATGGAAATATCGATATGGATGCTAAGGTGACTGGCTTTGATGCTTTAGTGGCGGTTTGCCATATTGCTTATAAGAAACTCAAGCAAAAGAAGAGGGAGGA GAAACAGAAAGTGGATGCAATATTGGGGGATGGAAAGATAGACGGGCCGGTGAGGGAGAAAGCTCTTCAAAAGCCTATGTCCGACCAGGTTCATGATGGC TCTACTACTAGGAAGAGAACTTCTGAGGAGAGGCCTTCTTGTTCTACGGAGAGGTATAAAAGGAATGGTTTTAGACAAGGAATTATGACTGGGGTTCGTG ATGGAGGATCGAACCAAGACTTGTTTTTGAGAAAGGATACCGTTTTCAAACGATCCTACGCTCACAGCAAGTTAAATAAGAGATTGAAGGAGGAGATGCC AAACTGTGGTGTTGGCTCACTGGCAGAGTTGCCTCAAGAAGTCAAAGAAAGAATTGCTTCTATGAAAGGCAAAGATGTGGAGTTAGTGGTGGACAAACTG TTGTATGCAACTGACGTGAACGCTGGCAACAGTCGTCTGTCGATCCCTCTTAGACAAGTTATAGCTAAGAATTTCTTGACAGATGAAGAGAAGAGGGCTC TTATAGATGATAATTGTCTGAAAGTAAAGATTCTTGAACCCTCTTTGGAAATGGTTAGTGACATGAATCTCAAGCAATGGAACATGTTTAAGAAGAAGGG CAGTGTTAGTTCATCATATGTGTTCATAACACATTGGAATTCTCTAAGGAGAAGAAGTAATTTGCATAGGCAAGACAGAATTCAGGTTTGGTCTTTCCGA GTAGAAAACGACCTCTACTTTGCTCTTGTTAAGGTCGGTGAAAGATAA
AA sequence Show only first row Show all	>Potri.015G014200.1 pacid=42775389 polypeptide=Potri.015G014200.1.p locus=Potri.015G014200 ID=Potri.015G014200.1.v4.1 annot-version=v4.1 MKNIDSSTSTVEERKKESEEEVDVLFVTEKDLKDGNIDMDAKVTGFDALVAVCHIAYKKLKQKKREEKQKVDAILGDGKIDGPVREKALQKPMSDQVHDG STTRKRTSEERPSCSTERYKRNGFRQGIMTGVRDGGSNQDLFLRKDTVFKRSYAHSKLNKRLKEEMPNCGVGSLAELPQEVKERIASMKGKDVELVVDKL LYATDVNAGNSRLSIPLRQVIAKNFLTDEEKRALIDDNCLKVKILEPSLEMVSDMNLKQWNMFKKKGSVSSSYVFITHWNSLRRRSNLHRQDRIQVWSFR VENDLYFALVKVGER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24850	B3		Domain of unknown function (DU...		Potri.015G014200 [exp]	0	1
AT2G33500	CO	COL14	B-box type zinc finger protein...		Potri.001G061800 [exp]	20.85	0.5478	COL3.2
					Potri.018G036850 [exp]	66.39	0.4231
					Potri.004G021400 [exp]	70.14	0.4193
AT2G04920			F-box and associated interacti...		Potri.018G007900 [exp]	115.41	0.4227
AT3G20190			Leucine-rich repeat protein ki...		Potri.014G002700 [exp]	120.58	0.4071
					Potri.004G068650 [exp]	130.99	0.4163
AT5G12000			Protein kinase protein with ad...		Potri.006G225300 [exp]	133.62	0.4245
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G195150 [exp]	174.07	0.3783

Compare expression of checked genes

Potri.015G014200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.