Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG29.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53430 1322 / 0 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 1288 / 0 SDG16, ATX4 SET domain protein 16 (.1) AT3G61740 983 / 0 SDG14, ATX3 SET domain protein 14 (.1.2) AT2G31650 243 / 3e-66 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 234 / 3e-63 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 123 / 5e-28 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G76710 91 / 8e-19 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G02580 91 / 3e-18 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT2G23380 90 / 6e-18 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT4G02020 88 / 2e-17 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G013900 [exp] 1898 / 0 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 1070 / 0 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2) Potri.014G098400 [exp] 1063 / 0 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.002G232800 [exp] 242 / 8e-66 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 138 / 7e-33 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 130 / 3e-30 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.018G023000 [exp] 128 / 1e-29 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.005G260100 [exp] 123 / 3e-28 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G089400 [exp] 103 / 6e-22 AT1G77800 939 / 0.0 PHD finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019026 [exp] 1268 / 0 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10012626 [exp] 943 / 0 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 878 / 0 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10005007 [exp] 682 / 0 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10030262 [exp] 573 / 0 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10004012 [exp] 391 / 1e-122 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10026725 [exp] 138 / 8e-33 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 138 / 1e-32 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025172 [exp] 123 / 5e-28 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 123 / 5e-28 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain CL0049 [poplar] [flax] PF00856 [poplar] [flax] SET SET domain CL0390 [poplar] [flax] zf-FYVE-PHD PF13831 [poplar] [flax] PHD_2 PHD-finger CL0390 [poplar] [flax] zf-FYVE-PHD PF13832 [poplar] [flax] zf-HC5HC2H_2 PHD-zinc-finger like domain
Representative CDS sequence Show only first row Show all	>Potri.015G014300.1 pacid=42775540 polypeptide=Potri.015G014300.1.p locus=Potri.015G014300 ID=Potri.015G014300.1.v4.1 annot-version=v4.1 ATGATAATTAAGCGGAACTTGAAATCTCAAATGCCGAGTTTAAAACGGTGTAACAAACTCGGCGACTACTCAGCTTGTGAAGAAGACGACAACTCACCTT TATCTCGGAGGAAGAAACGCAAGCTTAAGAGCAACAGCCACCACGGAAGTAGTGGTTATTATCCTCTCAATCTGCTCCGCGAGGTCGCCGCCGGTGTGAT TCCGGTGAGTTTGAAGTCGTTGAATGGATTCGCTGCTGCTGCTTCTTGGTGTACGGAGGTATCATGCTCGCCACCTGAATCCAATGCCCGAGATTCAATG AAGATGAGAGCGGTGAATGACAATGGTAATTGTAATAGTAATCGGACGGTGGAGGTTTCGCGACCACCGCTAGTGCGGACATCGAGAGGGAGAGTTCAGG TATTGCCTTCGAGGTTTAATGATTCAGTTATTGAAATTTGGAGAAAAGAAAGTAAGACTAATTTGCATGATTATAGCTTTGGTGATAATGATAATGATAA TGACGAAGATGTTGTTGATGACGATGATGACGATGTTGATTATGATATTCAATTTAATAGTAATAGTAGTAGAAAGGTTAAAGTGAAAGTGAAAATGGGT TTCGGATTGCGTAGAATGGGCAGAAATGTTAGTAAAGTGAAGAAACAAAGCAGGCATTGTGCTGGCAAGTATGTGGATACGTGTGAGGAAGAGGAGGAGA AAGAGGATGATGAAGTGAAGTTTAAGGGTGGTTTTGATATGAAGAAGTATTATTCGAGTTGTTCACGTAGCACGCTTACTTCGGTGCATGAGAATCTGGT GGTGGATGATACTGAGTGTGGTGGGGTTTTGGATTCAAGTAGTGGGGAGAGGAAAGAAGATGAGTTGTTTGGGCCGGAGGATTTTTATTCGGGGGATATA GTGTGGGCGAAGTCGGGAAACAAATATCCATTTTGGCCAGCTATTGTTATTGATCCAATGACACAAGCACCCGAGTTGGTTTTGAGGTCTTGTATTGCTG ATGCAGCTTGTGTGATGTTTTTTGGTTGCTCTGGAAATGATGGGAATCAAAGGGATTATGCTTGGGTTCAGAGAGGGATGATCTTTCCGTTTATGGATTT TCTTGACAGGTTCCAGGAACAGTCTGAATTGGATGACTTCAATGGTGATTTCCAGATGGCGTTTGAGGAGGCATTTCTGGCTGAACAGGGGTTCACCGAG AAGTTGATACAAGATATGAACACAGCAGCTGGGAATCCGATTTATGATGAATCTGTGTATAGGTGCCTTCAGGAGGCTACTGGCTCAAACCAGGATCAGG ACTTTCATTCTCCAAACCAGGACATGATTTGGAAGAATAAAGACAAGGGACCCTGTGAAGGTTGTGGCACGAGCCTTTCTTTAAAAACTGCAAAGAAAAT GAAGTGTTCAAACCCTGGTGGCCAGTTCTTATGTAAAAAATGTGCTAGGCTAACAAAATCAAAACATTTTTGTGGCATATGCAAGAAGGTTTGGAATCAT TCAGACAGTGGGAGCTGGGCACGTTGTGATGGTTGTAAAGTTTGGATCCATGCAGAGTGTGACAGGATTTCCAGCAATCATTTTAAGGATCTGGGGGGCA TTGATTACTACTGCCCTACTTGCAAAGCAAAATTTAATTTTGAATTGTCAGATTCAGAAAAATCGCAGCTGAAATGCAAATCAAACAAAATTAAGGGTCA ACCAGCGCTACCTAATAAGGTTACTGTTATCTGCTCAGGAATGGAAGGCACATATTTCCCAAGTCTACACATGGTTGTTTGCAAATGTGGGTTCTGTGGT TCAGAAAAGCAAGCCCTTAGTGAATGGGAACAGCACACAGGTTCCAAAATTAAGAATTGGAGGATCAGTATTAGGGTGAAAGATTCCATGCTACTGCTAG AGCAATGGATGATGCAGTTAGCAGAGTACCATGCGCATGCCTCATCTACTAAACCTCAAAAACGACCTTCCATTAAAGAGCGGAAGCAGAAGCTGCTTGC TTTCTTACAAGTGAGATACGATCCTGTTTTTACAAAGTGGACAACAGAACGTTGTGCAGTTTGTAGATGGGTAGAAGATTGGGACTACAACAAGATTATT ATCTGCAACAGATGTCAGATAGCTGTTCATCAAGAATGTTATGGAGCACGAAACGTGCAGGATTTTACTTCTTGGGTTTGCAAAGCATGTGAAACACCAG ATGTTAGGAGGGAGTGTTGCCTTTGTCCTGTTAAAGGTGGTGCTCTAAAGCCAACTGATGTTGAGTCATTATGGGTTCATGTTACATGTGCTTGGTTTCA ACCCGAAGTCTCATTTGCAAGTGATGAAAAGATGGAACCTGCTCTTGGAATTTTAAGCATCCCTTCAAATTCTTTTGTAAAGATTTGTGTTATTTGTCAA CAAATTCATGGTTCGTGTACTCAATGTTGCAAGTGTTCCACTTATTACCATGCAATGTGTGCTTCGAGGGCAGGATATCGCATGGAGTTGCACTGCTTGG AGAAAAATGGGAGACAGACAACAAGAATGATTTCATATTGTGCATGTCACAGGGCTCCAAATCCGGACACGGTTTTGATCATACAGACTCCTGCAGGAGT GTTTTCTGCCAAAAGCCTTGTTCAAAATAAGAAAAGTGCTGGTACAAGGCTAATTTCATCTAATAGAATAAAACTTGAAGAGGAGTCAATGGAAGAAGCT ACTAAGTCTGAGCCACACTCTGCTGCGAGGTGTCGGGTCTTCAAAAGAGTGAACAGCAACAAGAAGCGAACAGAAGAAGAAGCTATTTACCATCGATTGA CAAGACCTTGTCATCATCCTTTCCTAGAGATACAGAGTTTGAATGCATTCAGAGTAGTAGAGGAGCCGAAAAGTTTTTCTTCTTTCAGGGAAAGGCTTTA CCACTTACAGAGAACTGAAAATGACCGAGTTTGCTTTGGGAGATCTGGAATACATGGATGGGGCCTCTTTGCACGAAGAAACATTCAAGAAGGAGAAATG GTTCTTGAGTATCGGGGTGAGCAAGTGAGAGGCAGTATTGCGGATCTGAGGGAGGTGCGCTATCGATTAGAAGGCAAAGACTGCTATCTTTTCAAGATCA GCGAAGAGGTAGTGGTAGATGCCACGGATAAAGGAAACATAGCGCGCTTAATAAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGG CGATAATGAAAGTCGTATAGTCCTTATTGCGAAGACAAATGTACCTGCTGGCGATGAGCTAACGTACGATTACTTGTTCGATCCTGATGAACCTGATGAA TTCAAAGTTCCCTGTTTATGTAAAGCTCCAAATTGCCGGAAGTTCATGAATTAG
AA sequence Show only first row Show all	>Potri.015G014300.1 pacid=42775540 polypeptide=Potri.015G014300.1.p locus=Potri.015G014300 ID=Potri.015G014300.1.v4.1 annot-version=v4.1 MIIKRNLKSQMPSLKRCNKLGDYSACEEDDNSPLSRRKKRKLKSNSHHGSSGYYPLNLLREVAAGVIPVSLKSLNGFAAAASWCTEVSCSPPESNARDSM KMRAVNDNGNCNSNRTVEVSRPPLVRTSRGRVQVLPSRFNDSVIEIWRKESKTNLHDYSFGDNDNDNDEDVVDDDDDDVDYDIQFNSNSSRKVKVKVKMG FGLRRMGRNVSKVKKQSRHCAGKYVDTCEEEEEKEDDEVKFKGGFDMKKYYSSCSRSTLTSVHENLVVDDTECGGVLDSSSGERKEDELFGPEDFYSGDI VWAKSGNKYPFWPAIVIDPMTQAPELVLRSCIADAACVMFFGCSGNDGNQRDYAWVQRGMIFPFMDFLDRFQEQSELDDFNGDFQMAFEEAFLAEQGFTE KLIQDMNTAAGNPIYDESVYRCLQEATGSNQDQDFHSPNQDMIWKNKDKGPCEGCGTSLSLKTAKKMKCSNPGGQFLCKKCARLTKSKHFCGICKKVWNH SDSGSWARCDGCKVWIHAECDRISSNHFKDLGGIDYYCPTCKAKFNFELSDSEKSQLKCKSNKIKGQPALPNKVTVICSGMEGTYFPSLHMVVCKCGFCG SEKQALSEWEQHTGSKIKNWRISIRVKDSMLLLEQWMMQLAEYHAHASSTKPQKRPSIKERKQKLLAFLQVRYDPVFTKWTTERCAVCRWVEDWDYNKII ICNRCQIAVHQECYGARNVQDFTSWVCKACETPDVRRECCLCPVKGGALKPTDVESLWVHVTCAWFQPEVSFASDEKMEPALGILSIPSNSFVKICVICQ QIHGSCTQCCKCSTYYHAMCASRAGYRMELHCLEKNGRQTTRMISYCACHRAPNPDTVLIIQTPAGVFSAKSLVQNKKSAGTRLISSNRIKLEEESMEEA TKSEPHSAARCRVFKRVNSNKKRTEEEAIYHRLTRPCHHPFLEIQSLNAFRVVEEPKSFSSFRERLYHLQRTENDRVCFGRSGIHGWGLFARRNIQEGEM VLEYRGEQVRGSIADLREVRYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDNESRIVLIAKTNVPAGDELTYDYLFDPDEPDE FKVPCLCKAPNCRKFMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	0	1	SDG29.1
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	2.00	0.8810
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	3.46	0.8582
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	5.83	0.8804
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	6.48	0.8666
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	7.07	0.8603
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.014G000500 [exp]	7.93	0.8259	Pt-HAC1.3
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	8.48	0.8530
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.001G359700 [exp]	10.95	0.8437	TOP1.1
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	11.83	0.8467
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	12.12	0.8541

Compare expression of checked genes

Potri.015G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.