Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53440 439 / 1e-134 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G013800 [exp] 1286 / 0 AT5G53440 421 / 6e-128 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005006 [exp] 665 / 0 AT5G53440 397 / 5e-119 unknown protein Lus10019025 [exp] 659 / 0 AT5G53440 400 / 3e-119 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G014800.1 pacid=42776530 polypeptide=Potri.015G014800.1.p locus=Potri.015G014800 ID=Potri.015G014800.1.v4.1 annot-version=v4.1 ATGCCGAGAAGTTCCCGACACAAATCGAGCAAGCATAGCTCGAGAGAGTATTCAGATTCGGAGAAAAATTCGAGCTTGAAAGAGAAAAAGGCGGCCGCTG CGGTGAAAGAGGAGAATATTAGCAATAGTAGCAGTGTTAGGGTTTCGAGCGAGAAGAGAAAGTTAGATTTGAAGGAGAATAAAGAAAATAAGGAATCTTT AAATGGGGAATATGTAGAGGAATATTCCTCCTCTTCGTCAAAGAGGAGAAAAGATCGAGCAGAGGAAAATAATGATAGGTGGAATGGTGGAGAGGATGAG AGAGGGGAGAAGAAGGGGAAGGAAAAAGGGAGCGAGGAGAGGTCGAAGAGTAGGAGGAGGGATGATAGCGTGGAGAAGAAGAGTGAGGGAAGGTATAGGG AGAGTAGTAGAAAGGAGGAGAGGGAGAGGGAAAGGGAGAAGGAGAGGGAGAGGGAGAGGGAAAAGAAAGGAAAAGAGGGGAGAAGTGAGAAGCGGATTGA GGTTGAGGAGTATTCGCGTGGAGGAAAACAAGTTTCTGAAAAAACTGCAAATGATCAATTGCGAAGTCCTGAATCAGAGAACCAGTCTGATAGACGTATT AGGAGAAAGAGAGATGATTCTGTTGATGGGGATAAGCAACAGGATGATTGTGGAGATGTAAATGGAAAACGCTTATCCTCAAGGGAGGATGTTGTCAAGG ATGGAAAACCAAAGGATGAGAAGCACAATGATGATAGATATAGAGACAAGTACCATGAAGACACGGGCAGGGAAAATAGGCATCGAGATGATAAGCAAAA AGATGAGCGTGGTACAAGAGATAACATCAGGTCTGATGAGAAGCATGCAAGGGATGAGAAGGATGGTCCAGAAATTCGGAAGAAATCTAAGCCACAAGAC GGTGAGCGTGAGCGTGATCATGATCATGAGTTTGATATTGTCCGTGACCGTGATCATGATCGTAATCGTGATAGGGAACGAGACCGTGATCGGGACCGAG ATAGGGAGCGGGAGCGAGACCGTGACAGAGACCATGAACGTAATCTTGACTATGACGGGGCACATATTGATGATCGTAGTGCCAGATACAAAGATAGCAG GGGAAGGAAAAGATCTCCTGAAGATCATGATGACTATAATGATACTAAATCCAAGGGTATAAAGGCACCTTATCCTGACATGGAAAAGAAATCTTTGAGC AGTGGGAGAGTTGAGTCGGATGACAGGGGAAGGTCTCAATCACGGCAAGCCCATCTAGATAATAATGTTAGCGGTAATAGACGGAGGACTTCCCCAGATA CCAGTTCACATGGGGCTGTTGAAGAGTACAGGCATTTCAAAGCAGAAGAATCAAAGTACAGGGATGCTGTGATTGAACAGAGGTCGAAAGCAAGTTCTTC AAGAGAGGCTACTGATTTCCCAGTAACATCAGAGAGAGCATCCAAGTATAGGTCTTCTGATAAACCTATTAAAATGGATGATGGCCATCCGGGTGAGTTG TTGATTGAGAGGTCTTCAAGTTCTAGAGCTTCACCCCGGGGCTTGGTTGACAGATCCCCGTCATCAAGCCATGAGCGCAGATATGCAAACAGAACTGGTG TCAGGCACAGTGTTGACATTGAAGAATCAGCGAGGAGGAGAAGTGGTTCCATCAGTGCTAGAGATTTGCCCTCTGCTGATGACAGACTAGGTCGGGATTT ACCTTTGGAGAAGCCTCTATCAGATGAGTCAACTCCAGCTGATTCATCCTTTTATAATAGAACTAATCAGAACAATTCTGCTTTGATTCCTCCACATGCC TTCAGGGGTGGAGGTGGCAGCCCATCTTTTATGGGTTCACTAGAAGAAGATAGTAGAGTTAACACCCGCTACAAGAGAGGAGGCGGTGATCCCAATCTGG GAAGAGGTCAAGGAAATGCTTGGAGAGGCACCCCAAACTGGTCTTCACCCATGCCAAATGGCTACATGCCTTTCCAACATGGGCCGCATGGAGGTTTTCA AGCAATGATGCCCCATTTTGCATCTCCACCACTGTTCAGTGCCAGGCCTTCTATGGAAATTAACCACTCTGGGATTCCTTACCACATACCTGATGCTGAC AGGTTTTCTGGTCATTTGAGACCACTTGGGTGGCATAATATGATGGATGGGTCAGGACCTTCTCAAATGCATGGATGGGATGGAAATAATGGTGTGTTTA GGGATGAACCACATGCATATGGGCAAGAATGGGACCAGAATAGGCATCAGTTGAATGGCAGGGGGTGGGAAACTGGCACTGATATATGGAAAACACAAAA TGGTGATGTGAATATGGACTCGCCAGCAGCTTCTGTGAAAGAGGATTTTCCAGTGCAGGCACCTATGGAGAATGTTTTGGCTGGACAAGTAGGTCACCAG TCGCAAAATGAAAATACTCATCAAAAGGTCCAAGCAGAAATTGTAGAAACAAAGTCAGCTGTTGCTTCAGCAAAAGAATCTTTGAGGTCTATGCCTAAAA CTACCCATGAGAAGATGCCTGATCCGCCTAAACTGCAAAGTAATGATAGGAGTCATTTTGCCCGTGCTTATCTCTCTAAGCTGGACATTTCAACAGAACT TGCCAGTCCAGAGTTGTATAGCCAATGTATGAGTTTGCTCAGCATGGAGCAGGGTGCAAATGCTGATGAAGATATTGTTATGCTCGTAAACTTGAAGGAT GGTGCAAGAGCAGTGCCAAAAAGTTTCGATTCCATTTACAGCCTTTCACTTCTTCCTGCCACAAAAGATTCTGTTTTTCAGAGAGCCATGGATTACTACA AGAAGGAGAGAGTAGGTCTGAGGGGCTTGCCAATTGTTAATGGTGGAACAATAAATGCTATTTCAACTACCAAAGTAAAAGATGAGCCTATTGATGATGG GCAAAAAGCAGAAGAACCGGTTTTAAATCAGGATGAAGAAATGCATGACGTTCCAAAGCTGAATTTAGATCAGAAGAAAGCTGAAGATGTTCCACTTGCT GATACCCATGAGGAATCGGTAGAACTTGTTTCGAAGGATTATGCTCAGGCTCGCACCCCCTCCCAGGATTTTCCTGACCAAGCTCTTAGTCAAGATAATC TGGAAAAGCCTGTAGAAATTCCTAGTGGTAATAAGATTGATGGGGTGCCATCTGAGCCGGGCAATTCAGAAGGTGTAGAGGGAAGCATCCCAAGCCCTGA TAATGCATCACAAGCTTCCTCCATTTCACCTGCTGAAGGTGTAGAAGATAATGCTTTGCAATGTGCTGAAGAAGGGCGGGGGTCTGGTGATGCAATATGT GGTCCTTTATTTTTTTCGGATGATTCTCTCAAGGCATCTGGGGCTTTGATGCCTGGATCAAATGAGTCTGAGTCGGTAATTTTAAGTCGGATACATCATT CTCCTGAAAGTACACATTGA
AA sequence Show only first row Show all	>Potri.015G014800.1 pacid=42776530 polypeptide=Potri.015G014800.1.p locus=Potri.015G014800 ID=Potri.015G014800.1.v4.1 annot-version=v4.1 MPRSSRHKSSKHSSREYSDSEKNSSLKEKKAAAAVKEENISNSSSVRVSSEKRKLDLKENKENKESLNGEYVEEYSSSSSKRRKDRAEENNDRWNGGEDE RGEKKGKEKGSEERSKSRRRDDSVEKKSEGRYRESSRKEEREREREKEREREREKKGKEGRSEKRIEVEEYSRGGKQVSEKTANDQLRSPESENQSDRRI RRKRDDSVDGDKQQDDCGDVNGKRLSSREDVVKDGKPKDEKHNDDRYRDKYHEDTGRENRHRDDKQKDERGTRDNIRSDEKHARDEKDGPEIRKKSKPQD GERERDHDHEFDIVRDRDHDRNRDRERDRDRDRDRERERDRDRDHERNLDYDGAHIDDRSARYKDSRGRKRSPEDHDDYNDTKSKGIKAPYPDMEKKSLS SGRVESDDRGRSQSRQAHLDNNVSGNRRRTSPDTSSHGAVEEYRHFKAEESKYRDAVIEQRSKASSSREATDFPVTSERASKYRSSDKPIKMDDGHPGEL LIERSSSSRASPRGLVDRSPSSSHERRYANRTGVRHSVDIEESARRRSGSISARDLPSADDRLGRDLPLEKPLSDESTPADSSFYNRTNQNNSALIPPHA FRGGGGSPSFMGSLEEDSRVNTRYKRGGGDPNLGRGQGNAWRGTPNWSSPMPNGYMPFQHGPHGGFQAMMPHFASPPLFSARPSMEINHSGIPYHIPDAD RFSGHLRPLGWHNMMDGSGPSQMHGWDGNNGVFRDEPHAYGQEWDQNRHQLNGRGWETGTDIWKTQNGDVNMDSPAASVKEDFPVQAPMENVLAGQVGHQ SQNENTHQKVQAEIVETKSAVASAKESLRSMPKTTHEKMPDPPKLQSNDRSHFARAYLSKLDISTELASPELYSQCMSLLSMEQGANADEDIVMLVNLKD GARAVPKSFDSIYSLSLLPATKDSVFQRAMDYYKKERVGLRGLPIVNGGTINAISTTKVKDEPIDDGQKAEEPVLNQDEEMHDVPKLNLDQKKAEDVPLA DTHEESVELVSKDYAQARTPSQDFPDQALSQDNLEKPVEIPSGNKIDGVPSEPGNSEGVEGSIPSPDNASQASSISPAEGVEDNALQCAEEGRGSGDAIC GPLFFSDDSLKASGALMPGSNESESVILSRIHHSPESTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53440			unknown protein		Potri.015G014800 [exp]	0	1
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	1.00	0.9468
AT5G12400			DNA binding;zinc ion binding;D...		Potri.001G254300 [exp]	1.41	0.9348
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	4.89	0.9128
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	5.74	0.9209
AT1G32810			RING/FYVE/PHD zinc finger supe...		Potri.011G152600 [exp]	6.00	0.8749
AT4G31880			unknown protein		Potri.006G186700 [exp]	6.32	0.8896
AT5G53440			unknown protein		Potri.012G013800 [exp]	6.48	0.9054
AT3G58110			unknown protein		Potri.013G119700 [exp]	6.70	0.8823
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.001G082100 [exp]	7.07	0.9110
AT5G08450			unknown protein		Potri.004G135800 [exp]	7.21	0.8881

Compare expression of checked genes

Potri.015G014800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.