Plant FIBer expression Database

Potri.015G014900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G015050
[exp]
52 / 2e-09 ND /
Potri.015G137200
[exp]
0 / 1 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G014900.2 pacid=42775385 polypeptide=Potri.015G014900.2.p locus=Potri.015G014900 ID=Potri.015G014900.2.v4.1 annot-version=v4.1
ATGCATTGTAATCTGGGGCTGATAAGCTTTATACAGAGAGTAAAGATGAGACTGTTAAGAGTTTGGGGTTTCCAGTCTGGACAGGCATGGAGTACACAGG
TGTATGCTTTGTTCGTGGGTAATTACTTGTTATTTGCCGGGACATTAATAATTCAAAGCAGGGTCATTTTTTGTGGTGGTAGGAGAGTTTGTGATGAAAC
TCGTCAGGGAAGAATATTGATGCAGAGGCAATATACATCGAATTTAGTTGACAGCGAGGCGCTTGAGGCAAGATGGTACTGCTCAATTCTCAAATTTCAG
CTCTATCTTGCGGTGATTTTAGTGTTCCATCTCTTTTGGGAATTCTTTGAAGGCAAAACGCCTACACATAATACGATAATGTTTATTAAGCCCGCTGTTA
CCTTATGA
AA sequence
>Potri.015G014900.2 pacid=42775385 polypeptide=Potri.015G014900.2.p locus=Potri.015G014900 ID=Potri.015G014900.2.v4.1 annot-version=v4.1
MHCNLGLISFIQRVKMRLLRVWGFQSGQAWSTQVYALFVGNYLLFAGTLIIQSRVIFCGGRRVCDETRQGRILMQRQYTSNLVDSEALEARWYCSILKFQ
LYLAVILVFHLFWEFFEGKTPTHNTIMFIKPAVTL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Potri.015G014900
[exp]
0 1
AT4G14820 Pentatricopeptide repeat (PPR)... Potri.008G154301
[exp]
2.44 0.7873
AT3G20480 AtLpxK lipid X K, tetraacyldisacchari... Potri.001G418800
[exp]
3.16 0.8297
AT5G10630 Translation elongation factor ... Potri.018G006500
[exp]
12.80 0.7180
AT3G54440 glycoside hydrolase family 2 p... Potri.001G027400
[exp]
16.37 0.7779
AT1G02120 VAD1 VASCULAR ASSOCIATED DEATH1, GR... Potri.002G137800
[exp]
17.46 0.7773
AT3G14460 LRR and NB-ARC domains-contain... Potri.014G005400
[exp]
19.59 0.7729
AT3G14470 NB-ARC domain-containing disea... Potri.004G170232
[exp]
30.14 0.7565
AT5G67640 unknown protein Potri.007G006000
[exp]
32.00 0.7408
AT5G36930 Disease resistance protein (TI... Potri.019G001600
[exp]
32.32 0.7554
AT5G47940 unknown protein Potri.009G060000
[exp]
34.59 0.7388

Potri.015G014900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.