Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13260 49 / 7e-08 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT1G68840 46 / 9e-07 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G35520 41 / 5e-05 ARF ARF15 auxin response factor 15 (.1) AT1G25560 41 / 8e-05 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G19850 39 / 0.0004 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT1G59750 39 / 0.0004 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT1G77850 39 / 0.0005 ARF ARF17 auxin response factor 17 (.1) AT5G60450 39 / 0.0006 ARF ARF4 auxin response factor 4 (.1) AT5G37020 38 / 0.0006 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT4G30080 38 / 0.0006 ARF ARF16 auxin response factor 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G015275 [exp] 228 / 7e-79 AT4G01500 44 / 4e-06 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G015501 [exp] 226 / 2e-78 AT1G13260 46 / 1e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.015G014850 [exp] 220 / 5e-76 AT4G01500 45 / 3e-06 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.012G013700 [exp] 166 / 2e-54 AT4G01500 52 / 6e-09 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G015800 [exp] 160 / 3e-52 AT1G13260 44 / 7e-06 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Potri.012G012950 [exp] 159 / 7e-52 AT1G35520 49 / 9e-08 auxin response factor 15 (.1) Potri.015G016901 [exp] 159 / 9e-52 AT1G34390 49 / 1e-07 auxin response factor 22 (.1) Potri.012G013000 [exp] 159 / 1e-51 AT4G01500 46 / 9e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.012G013501 [exp] 158 / 2e-51 AT4G01500 48 / 3e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041487 [exp] 44 / 6e-06 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10034276 [exp] 42 / 4e-05 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10035059 [exp] 41 / 6e-05 AT1G13260 250 / 2e-96 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10026510 [exp] 39 / 0.0003 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10012421 [exp] 39 / 0.0004 AT1G19850 1026 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10027600 [exp] 39 / 0.0006 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 39 / 0.0006 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10041340 [exp] 38 / 0.0008 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10023519 [exp] 38 / 0.0009 AT4G30080 622 / 0.0 auxin response factor 16 (.1) Lus10040403 [exp] 38 / 0.001 AT4G30080 625 / 0.0 auxin response factor 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G015650.1 pacid=42776271 polypeptide=Potri.015G015650.1.p locus=Potri.015G015650 ID=Potri.015G015650.1.v4.1 annot-version=v4.1 ATGGCGAGATTCTCAAAGGCACTCAGGAAGACTGATATTAAAAAGAGACTCTCAGTGCCGACCGGGTTTCTCAGCTCTCTTCCATCTTTTAATGGTGGTG GTCATGCTGTAGATTTTCAAGCTGTAGATGGAAGTGGCCGTGTTTGGGCCTTCAGATGCTCAATTCGCAAGAAAGGACATCCAAAACCAGTTATTTCAAA GGGTTGGCTCGCTTTTGTTGCTAGCAAGAACCTTAAAGTTGGTGACAAGGTCACGTTCTTAAGGGAGAAAAACGAAGCTGGCGCCAAAACGCATGCTTAC GAGATTCGGGCTGAGAAAGAAATCAGGATATTTGGTGCTGTTTTCGGATATGCAACCATAATATAG
AA sequence Show only first row Show all	>Potri.015G015650.1 pacid=42776271 polypeptide=Potri.015G015650.1.p locus=Potri.015G015650 ID=Potri.015G015650.1.v4.1 annot-version=v4.1 MARFSKALRKTDIKKRLSVPTGFLSSLPSFNGGGHAVDFQAVDGSGRVWAFRCSIRKKGHPKPVISKGWLAFVASKNLKVGDKVTFLREKNEAGAKTHAY EIRAEKEIRIFGAVFGYATII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.015G015650 [exp]	0	1
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G015275 [exp]	4.24	0.8816
					Potri.016G068650 [exp]	6.32	0.8998
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.002G012800 [exp]	7.48	0.8910	Ptr4CL20
AT3G44610			Protein kinase superfamily pro...		Potri.009G146500 [exp]	13.74	0.8879
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.015G015501 [exp]	15.55	0.7059
AT2G27180			unknown protein		Potri.009G151600 [exp]	15.65	0.8827
					Potri.018G001950 [exp]	22.97	0.8673
AT5G46540		ABCB7, PGP7	ATP-binding cassette B7, P-gly...		Potri.006G071901 [exp]	23.04	0.6607
AT1G20440		AtCOR47, RD17, ...	cold-regulated 47 (.1)		Potri.002G013200 [exp]	23.43	0.8708
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174202 [exp]	24.81	0.8731

Compare expression of checked genes

Potri.015G015650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.