Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01500 47 / 4e-07 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G34390 47 / 6e-07 ARF ARF22 auxin response factor 22 (.1) AT1G01030 45 / 3e-06 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT1G35520 43 / 1e-05 ARF ARF15 auxin response factor 15 (.1) AT1G35540 42 / 3e-05 ARF ARF14 auxin response factor 14 (.1) AT1G43950 41 / 4e-05 ARF ARF23 auxin response factor 23 (.1) AT1G35240 41 / 5e-05 ARF ARF20 auxin response factor 20 (.1) AT3G25730 41 / 7e-05 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G34310 40 / 0.0002 ARF ARF12 auxin response factor 12 (.1) AT2G46870 38 / 0.0006 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G016100 [exp] 206 / 3e-70 AT4G01500 54 / 2e-09 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.012G013167 [exp] 142 / 7e-45 AT1G43950 49 / 1e-07 auxin response factor 23 (.1) Potri.012G012850 [exp] 141 / 1e-44 AT4G01500 49 / 6e-08 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G016450 [exp] 140 / 2e-44 AT4G01500 47 / 4e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.012G013700 [exp] 140 / 4e-44 AT4G01500 52 / 6e-09 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) Potri.015G016901 [exp] 138 / 2e-43 AT1G34390 49 / 1e-07 auxin response factor 22 (.1) Potri.012G012950 [exp] 137 / 3e-43 AT1G35520 49 / 9e-08 auxin response factor 15 (.1) Potri.015G016700 [exp] 137 / 4e-43 AT1G34390 46 / 1e-06 auxin response factor 22 (.1) Potri.012G013000 [exp] 135 / 2e-42 AT4G01500 46 / 9e-07 NGATHA4, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030240 [exp] 46 / 1e-06 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10005264 [exp] 40 / 0.0001 AT2G33860 580 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10000748 [exp] 40 / 0.0001 AT4G33280 54 / 3e-08 AP2/B3-like transcriptional factor family protein (.1) Lus10013942 [exp] 40 / 0.0002 AT2G33860 579 / 0.0 ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10026510 [exp] 39 / 0.0006 AT4G30080 694 / 0.0 auxin response factor 16 (.1) Lus10040906 [exp] 38 / 0.0007 AT5G62000 367 / 2e-114 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10005930 [exp] 38 / 0.0008 AT5G62000 361 / 2e-112 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10021467 [exp] 38 / 0.0008 AT4G30080 588 / 0.0 auxin response factor 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G016000.1 pacid=42776290 polypeptide=Potri.015G016000.1.p locus=Potri.015G016000 ID=Potri.015G016000.1.v4.1 annot-version=v4.1 ATGGCTAGCTGCTCCAAGATCCTCACCAAGACAGATACTGAGAAGAGACTGTCAGTGCCTTCCAAGTTTCTCAAGTCTCTCCCACCATTCAAAGGCGGCC ATGCGGTGTTTTTTCAAGCTAAAGAGGAGAGAGGCAAAGTCTGGACTTTTCAGTGCTCCACTCGCAAGAAAGGGCCGTATCAGAAGCCAGTTCTTTCCAG GGGTTGGCTTGCATTTGCGAGGAAGAAGAAACTTGAAGTGGGTGACAAGATCGAGTTTTACAAGGCTAGAGATCAAGAAACTGAAAAACCCTTTTATGGA GTTCGAGTTGAAAGAGAAATCAAGATACTCGGTGCTGTTATTGGCTGTATGAACCCTTAA
AA sequence Show only first row Show all	>Potri.015G016000.1 pacid=42776290 polypeptide=Potri.015G016000.1.p locus=Potri.015G016000 ID=Potri.015G016000.1.v4.1 annot-version=v4.1 MASCSKILTKTDTEKRLSVPSKFLKSLPPFKGGHAVFFQAKEERGKVWTFQCSTRKKGPYQKPVLSRGWLAFARKKKLEVGDKIEFYKARDQETEKPFYG VRVEREIKILGAVIGCMNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G016000 [exp]	0	1
					Potri.007G013700 [exp]	2.82	0.9849
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374700 [exp]	11.53	0.9864
					Potri.006G260985 [exp]	13.26	0.9861
					Potri.001G091400 [exp]	20.19	0.9860
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374600 [exp]	23.32	0.9859
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.013G017210 [exp]	24.49	0.9355
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G212900 [exp]	25.21	0.9581
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374800 [exp]	26.26	0.9858
AT1G16260			Wall-associated kinase family ...		Potri.003G185800 [exp]	27.38	0.9850
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219450 [exp]	34.46	0.9849

Compare expression of checked genes

Potri.015G016000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.