Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53450 167 / 9e-50 ORG1 OBP3-responsive gene 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G016801 [exp] 214 / 2e-67 AT5G53450 758 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G017100 [exp] 216 / 3e-67 AT5G53450 890 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G016600 [exp] 196 / 6e-65 AT5G53450 224 / 5e-71 OBP3-responsive gene 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038813 [exp] 186 / 5e-56 AT5G53450 817 / 0.0 OBP3-responsive gene 1 (.1.2) Lus10014920 [exp] 59 / 1e-10 AT5G53450 567 / 0.0 OBP3-responsive gene 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G016375.1 pacid=42775032 polypeptide=Potri.015G016375.1.p locus=Potri.015G016375 ID=Potri.015G016375.1.v4.1 annot-version=v4.1 ATGGCATGGATAACTGAATTGGGTTTTTTTCAGGCGGATGAGGTGGTTTTTGAAGCAATAGTGAAGGATTCTAATAGCCCTTTGTATAACATTAAAGTTG TGTTTGGGAAACTTATCAGTACTCAAGCAAAACGTAGAGGAATGCGAGCAGTAGAGGTGTTGAAGAAGCTGGTTTCGCCTGGCCGTGGTTCGTTTACTCT GGCACATGGGTATCATGGTAGTTTTTCTTTGAGACATTGGCTTCAACAATCAGATTGGCTTCCTACCTTGGAAGCCAATCTTGCATTGGATGAGGAATCT ATCAGGAGGGTGGGAGATGACACTGTTGGAGGACCTGCTGTCTATCGGCAGTTGCGAATAACACGCATATTGATGAGGGATCTCTTGATTGGAGTATCAA AGTCACGGACTTTCAGATATAGAGTTGAGGCTGGAGAATGTGCATATAAGCCCAGTGGATAG
AA sequence Show only first row Show all	>Potri.015G016375.1 pacid=42775032 polypeptide=Potri.015G016375.1.p locus=Potri.015G016375 ID=Potri.015G016375.1.v4.1 annot-version=v4.1 MAWITELGFFQADEVVFEAIVKDSNSPLYNIKVVFGKLISTQAKRRGMRAVEVLKKLVSPGRGSFTLAHGYHGSFSLRHWLQQSDWLPTLEANLALDEES IRRVGDDTVGGPAVYRQLRITRILMRDLLIGVSKSRTFRYRVEAGECAYKPSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016375 [exp]	0	1
AT4G33060			Cyclophilin-like peptidyl-prol...		Potri.006G225167 [exp]	3.00	0.8305
AT2G34750			RNA polymerase I specific tran...		Potri.007G065101 [exp]	4.89	0.7976
					Potri.019G076450 [exp]	8.48	0.7776
AT4G33060			Cyclophilin-like peptidyl-prol...		Potri.006G225201 [exp]	12.44	0.8026
AT4G27680			P-loop containing nucleoside t...		Potri.012G027000 [exp]	16.12	0.8064
					Potri.005G247051 [exp]	16.24	0.6928
AT5G28530	FAR1_related	FRS10	FAR1-related sequence 10 (.1)		Potri.014G167000 [exp]	17.66	0.7448
AT4G27680			P-loop containing nucleoside t...		Potri.012G027101 [exp]	21.33	0.7880
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.001G432400 [exp]	27.22	0.6494
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	30.49	0.7569

Compare expression of checked genes

Potri.015G016375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.