Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53450 758 / 0 ORG1 OBP3-responsive gene 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G017100 [exp] 1035 / 0 AT5G53450 890 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G016500 [exp] 362 / 4e-122 AT5G53450 288 / 2e-93 OBP3-responsive gene 1 (.1.2) Potri.015G016600 [exp] 272 / 5e-89 AT5G53450 224 / 5e-71 OBP3-responsive gene 1 (.1.2) Potri.015G016375 [exp] 214 / 5e-67 AT5G53450 168 / 6e-50 OBP3-responsive gene 1 (.1.2) Potri.015G016300 [exp] 197 / 6e-61 AT5G53450 180 / 5e-55 OBP3-responsive gene 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038813 [exp] 781 / 0 AT5G53450 817 / 0.0 OBP3-responsive gene 1 (.1.2) Lus10014920 [exp] 587 / 0 AT5G53450 567 / 0.0 OBP3-responsive gene 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G016801.1 pacid=42775982 polypeptide=Potri.015G016801.1.p locus=Potri.015G016801 ID=Potri.015G016801.1.v4.1 annot-version=v4.1 AATGGTAGTATCATCGGTGTGAGAAGCAGTTGTTCTGGGAGAGAAGCAGTTGATCGTGTCAGTATTGGCCTTGGTGGCCGGGCGGATGAGGTGGTTTTCG AAGCAATAGTAAAGGATTCTAATAGCCCTTTGCATAACATTAAAGTTGTGCTTAGGAAACTTGTCAGTACTCAAGCAAAACGTAGAGGAATGCGAGCAAT AGAGGTATTGAAGAAGCTGGTTCGCCGTAAACTTATGTACCATTCTTATTCGATGCAAGTTTATGGTTATATTTCTTCACCTACTAGTGGCCGTGGTTCG TTTACTCTGGTACATGGGTATCATGGTAGTTTTTCTTTGAGACATTGGCTTCAACAATCAGATTGGCTTCCTACCTTGGAAGCCACTCTGGCATTGGATG AGGAATCTGTCAGGAGGGTGGGAGATGACACGGTTGGAGGACCTGCTGTCTCTCGGCAGTTGCGAATAACACGCATATTGATGAGGGATCTCTTGATTGG AAATACAGAGTTGAGGCTGGAGAATGTGCATATAAGCCCAGTGGATAGGCATATTAAAGTAGGGATACTAGGGAATGCTGCTGACTTTTACGATGATGGT CCAAATAGTAGCACACTGGACAACATGGACAGGCGGCAGATGATGATTGCATTTGACATGAGATGTGTAGGATTTATGATGGCAAATATGGTGCTGCGGG AACTCATGGATCCATTAATTTTCTTGAAGTTCAAATCATTCCTCATGAAGGGGAATGATCCTTCATGCTTGCGTGAATTTTTATTGCAAATCCTCAGTAG GAATTCTCCTTCTGGAAATGTTGGACTCCAAATACTTGATCAGAACTGGGGTGCTGGTTGGAACCTTTTATCCTTGTTATTGGCAACCAAACCTTCAAAA AGAATAAGTTGTTTGGATGCCCTTAGGCATCCATTTCTGTGTGGACCAAGATGGCGGGTGGCGCCATCCATGGATATCATCAGATGGGGTCTTGGCTCAA CTGCAGTTCGAATTACGGAGGAATACATTTATAAGCAGCCCCAGCGTAATAGGCTTTATTTTATCGAATTGATGGAGATGCTGAATGCTCATTCAAGGCC AAAGAACTGGTTGGAGTTGCTTCTAGGAAAATGGCGTCTATTAAACTATACTGGGAGACAAATAGGATTGACCCTTCGTCAGCCTTCTGCTCGCGTCCTG ATTAGTGATGTTTATCTAACTATAAATAGAGCATCAAAATTAAATACTAGTATTTCCTTCACATCGGACATTGGCTTCACGGTCATGAATGGTGGAGCCT GGCCTCATGACAAAAGTGGTATAACTGGGAAATTGGAAGTAAACTCTTTATTCCGGTTGACATCTGGGAGACGGTTGTATCTTAAGGAGGAAAAGACATC AGAGAAGAAACTTGTCCCGTATAAGGAGACATCAGAGAAGTTATCCTTTGGGCAACCAAACAATCAAGATTCTTTAGCCCAGAAATTGTCAGCTAAAAAA TGGAGGAAACTTGTCCCGTATAAGGAGTTTCCCTGGAGCCTTCCAGTGGCCAAACTTGTTTCAGCTGACATTGAAGTGACAATGAGTCTCGGGGACAACC TTAATCAACATGATGTTACACCAAGCAGTATAGTTCAAGAAATTCGTGTGCAAGTTCCGCCTGAGATGTTTGATTTACTGCTAGTCCTGCGCGGGGTCAA TGGATCAGCTCTCTTATTTACAAGATCTATGTGTTAA
AA sequence Show only first row Show all	>Potri.015G016801.1 pacid=42775982 polypeptide=Potri.015G016801.1.p locus=Potri.015G016801 ID=Potri.015G016801.1.v4.1 annot-version=v4.1 NGSIIGVRSSCSGREAVDRVSIGLGGRADEVVFEAIVKDSNSPLHNIKVVLRKLVSTQAKRRGMRAIEVLKKLVRRKLMYHSYSMQVYGYISSPTSGRGS FTLVHGYHGSFSLRHWLQQSDWLPTLEATLALDEESVRRVGDDTVGGPAVSRQLRITRILMRDLLIGNTELRLENVHISPVDRHIKVGILGNAADFYDDG PNSSTLDNMDRRQMMIAFDMRCVGFMMANMVLRELMDPLIFLKFKSFLMKGNDPSCLREFLLQILSRNSPSGNVGLQILDQNWGAGWNLLSLLLATKPSK RISCLDALRHPFLCGPRWRVAPSMDIIRWGLGSTAVRITEEYIYKQPQRNRLYFIELMEMLNAHSRPKNWLELLLGKWRLLNYTGRQIGLTLRQPSARVL ISDVYLTINRASKLNTSISFTSDIGFTVMNGGAWPHDKSGITGKLEVNSLFRLTSGRRLYLKEEKTSEKKLVPYKETSEKLSFGQPNNQDSLAQKLSAKK WRKLVPYKEFPWSLPVAKLVSADIEVTMSLGDNLNQHDVTPSSIVQEIRVQVPPEMFDLLLVLRGVNGSALLFTRSMC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016801 [exp]	0	1
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Potri.012G055100 [exp]	3.46	0.7386
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.010G105700 [exp]	4.47	0.7426	FKF1.1
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	21.90	0.7205
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.011G043600 [exp]	35.49	0.6969
AT5G36930			Disease resistance protein (TI...		Potri.011G012750 [exp]	41.13	0.6971
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	42.61	0.6901
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Potri.017G013500 [exp]	43.47	0.6894
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.011G112800 [exp]	55.85	0.6594	UBP25.1
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Potri.010G070400 [exp]	65.95	0.6246
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Potri.006G230300 [exp]	72.09	0.5780	HDA910

Compare expression of checked genes

Potri.015G016801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.