Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53450 889 / 0 ORG1 OBP3-responsive gene 1 (.1.2) AT1G68830 68 / 1e-11 STN7 STT7 homolog STN7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G016801 [exp] 1059 / 0 AT5G53450 758 / 0.0 OBP3-responsive gene 1 (.1.2) Potri.015G016500 [exp] 451 / 1e-155 AT5G53450 288 / 2e-93 OBP3-responsive gene 1 (.1.2) Potri.015G016600 [exp] 293 / 4e-96 AT5G53450 224 / 5e-71 OBP3-responsive gene 1 (.1.2) Potri.015G016375 [exp] 216 / 7e-67 AT5G53450 168 / 6e-50 OBP3-responsive gene 1 (.1.2) Potri.015G016300 [exp] 200 / 3e-61 AT5G53450 180 / 5e-55 OBP3-responsive gene 1 (.1.2) Potri.008G116800 [exp] 71 / 2e-12 AT1G68830 883 / 0.0 STT7 homolog STN7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038813 [exp] 924 / 0 AT5G53450 817 / 0.0 OBP3-responsive gene 1 (.1.2) Lus10014920 [exp] 722 / 0 AT5G53450 567 / 0.0 OBP3-responsive gene 1 (.1.2) Lus10034273 [exp] 63 / 4e-10 AT1G68830 832 / 0.0 STT7 homolog STN7 (.1) Lus10041490 [exp] 49 / 1e-05 AT1G68830 754 / 0.0 STT7 homolog STN7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF04755 [poplar] [flax] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Potri.015G017100.3 pacid=42775251 polypeptide=Potri.015G017100.3.p locus=Potri.015G017100 ID=Potri.015G017100.3.v4.1 annot-version=v4.1 ATGGCGGCGACGGCGGCAATATATGGAGTCGGATTCTGTTCTTTTTCTGATAATTTGTCGACGAAGAAATTGATTAAACGACGTGGTAATGGTAGTATCA TCGGTGTGAGAAGTATTTGCTCTAGGAGAGAAGTAGGGACAGTGGTGAGGTGTTCGTCGTCGAGTAAGGCCACGGCTCCGTTGGAATCGGAAGGCGATGG AAGGAGATGTGTGATTGAGGAGGAGGAGGAGGAGGGAGGGGGAGGAGGAGGAGGAGGAGGAGATGTTATGAGGTTCAAGATGTCTGATTTTAAGGTGCTT GATCGTGTCAGTATTGGCCTTGGTGGCCGGGCGGATGAGGTGGTTTTCGAAGCAATAGTAAAGGATTCTAATAGCCCTTTGCATAACATTAAAGTTGTGC TTAGGAAACTTGTCAGTACTCAAGCAAAACGTAGAGGAATGCGAGCAATAGAGGTATTGAAGAAGCTGGTTCGCCGTAAACTTATGTACCATTCTTATTC GATGCAAGTTTATGGTTATATTTCTTCACCTACTAGTGGCCGTGGTTCGTTTACTCTGGTACATGGGTATCATGGTAGTTTTTCTTTGAGACATTGGCTT CAACAATCAGATTGGCTTCCTACCTTGGAAGCCACTCTGGCATTGGATGAGGAATCTGTCAGGAGGGTGGGAGATGACACGGTTGGAGGACCTGCTGTCT CTCGGCAGTTGCGAATAACACGCATATTGATGAGGGATCTCTTGATTGGAGTGAACTACTTGCACAGTCATGGACTTGCACATACAGAGTTGAGGCTGGA GAATGTGCATATAAGCCCAGTGGATAGGCATATTAAAGTAGGGATACTAGGGAATGCTGCCGACTTTTACGAGGATGGTCCAAATAGTAGCACACTGGAC ATGGACAGACGGCAGATGATGATTGCATTTGACATGAGATGTGTAGGATTTATGATGGCAAAAATGGTGCTGCGGGAACTCATGGATCCATTAAATTTCT TGAAGTTCAAATCATTCCTCATGAAGGGGAATGATCCTTCATGCTTGCGTGAATTTTTATTGCAAATCCTCAGTAGGAATTCTCCATCTGGAAATGTTGG ACTCCAAATACTCGATCGGAACTGGGGTGCCGGTTGGAACCTTTTATCCTTGTTATTGGCAACCAAACCTTCCAAAAGAATAAGTTGTTTGGATGCCCTC AGGCATCCATTTCTGTGTGGACCAAGATGGCGGGTGGCGCCATCCATGGATATCATCAGATGGGGTCTTGGCTCAACTGCAGTTCGAATTACGGAGGAAT ACATTTATAAGCAGCCCCAGCGTAATAGGCTTTCCTATTTTATCGAATTGATGGAGATGCTGAATGCTCATTCAAGGCCAAAGAACTGGTTGGAGTTGCT TCCAGGAAAATGGCGTCTGTTATACTGTACCGGGAGACAAATAGGATTGACCCTTCGTCAGCCTTCTGCTCGTGTCCTGATTGGTGACGTTTATCTAACT ATAAATAGAGCATCCAAATTAAATACTAGTATTTCCTTCACATCGGACATTGGCTTCACGGTCATGAATGGTCGAGACTGGCCTCATGACAAAAGTGGCG TAACTGGGAAATTGGAAGTAAACTCTTTATTCCGGTTGACATCCGGGAGACGGTTGTATCTTAAGGAGGAAAAGACATCAGAGAAGTTATCCTTTGGGCA ACCAAACAATCAAGATTCTTTAGCCCAGAAATTATCAGCTAAAAAATGGAGGAAACTTGTCCCGTATAAGGAGTTTCCATCGAGCCTTCCAGTGGCCAAA CTTGTTGCAGCTGACATTGAGGTGACAATGAGTCTCGGGGACAACCTTAATCAAAATGATGTTACACCAAGCAGTATAGTTCAAGAAATTCGTGTGCAAG TGCCACCTGAGATGTTTGATTTGTCTAGGCTCGTCTGTGGAACATATGTGGATTCCAGACTGCTAGTCCTGCGCGGGGTCAATGGATCAGCTCTCTTATT TACAAGATCTATGTGTTGA
AA sequence Show only first row Show all	>Potri.015G017100.3 pacid=42775251 polypeptide=Potri.015G017100.3.p locus=Potri.015G017100 ID=Potri.015G017100.3.v4.1 annot-version=v4.1 MAATAAIYGVGFCSFSDNLSTKKLIKRRGNGSIIGVRSICSRREVGTVVRCSSSSKATAPLESEGDGRRCVIEEEEEEGGGGGGGGGDVMRFKMSDFKVL DRVSIGLGGRADEVVFEAIVKDSNSPLHNIKVVLRKLVSTQAKRRGMRAIEVLKKLVRRKLMYHSYSMQVYGYISSPTSGRGSFTLVHGYHGSFSLRHWL QQSDWLPTLEATLALDEESVRRVGDDTVGGPAVSRQLRITRILMRDLLIGVNYLHSHGLAHTELRLENVHISPVDRHIKVGILGNAADFYEDGPNSSTLD MDRRQMMIAFDMRCVGFMMAKMVLRELMDPLNFLKFKSFLMKGNDPSCLREFLLQILSRNSPSGNVGLQILDRNWGAGWNLLSLLLATKPSKRISCLDAL RHPFLCGPRWRVAPSMDIIRWGLGSTAVRITEEYIYKQPQRNRLSYFIELMEMLNAHSRPKNWLELLPGKWRLLYCTGRQIGLTLRQPSARVLIGDVYLT INRASKLNTSISFTSDIGFTVMNGRDWPHDKSGVTGKLEVNSLFRLTSGRRLYLKEEKTSEKLSFGQPNNQDSLAQKLSAKKWRKLVPYKEFPSSLPVAK LVAADIEVTMSLGDNLNQNDVTPSSIVQEIRVQVPPEMFDLSRLVCGTYVDSRLLVLRGVNGSALLFTRSMC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G017100 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	5.83	0.9016
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	8.83	0.8595
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231200 [exp]	9.79	0.8994
AT3G26580			Tetratricopeptide repeat (TPR)...		Potri.013G090000 [exp]	10.09	0.9009
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	10.48	0.8846
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	12.96	0.8694
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Potri.014G137000 [exp]	20.00	0.8507
AT4G27290			S-locus lectin protein kinase ...		Potri.011G035913 [exp]	21.97	0.8601
AT3G16510			Calcium-dependent lipid-bindin...		Potri.001G070400 [exp]	22.62	0.8806
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.002G237500 [exp]	25.53	0.7976	Pt-KUP3.2

Compare expression of checked genes

Potri.015G017100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.