Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06160 721 / 0 ATO ATROPOS, splicing factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G012800 [exp] 900 / 0 AT5G06160 718 / 0.0 ATROPOS, splicing factor-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000360 [exp] 723 / 0 AT5G06160 743 / 0.0 ATROPOS, splicing factor-related (.1) Lus10019024 [exp] 723 / 0 AT5G06160 730 / 0.0 ATROPOS, splicing factor-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF11931 [poplar] [flax] DUF3449 Domain of unknown function (DUF3449) CL0361 [poplar] [flax] PF12108 [poplar] [flax] SF3a60_bindingd Splicing factor SF3a60 binding domain CL0361 [poplar] [flax] PF13297 [poplar] [flax] Telomere_Sde2_2 Telomere stability C-terminal CL0361 [poplar] [flax] PF16837 [poplar] [flax] SF3A3 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
Representative CDS sequence Show only first row Show all	>Potri.015G017200.4 pacid=42776649 polypeptide=Potri.015G017200.4.p locus=Potri.015G017200 ID=Potri.015G017200.4.v4.1 annot-version=v4.1 ATGTCGTCGACTCTATTAGAGGTGACTCGAGCCTCTCACGAGGAAGCAGAGAGACTCGAACGACTTATCGTTAAAGATCTCCAAAATGAACCAGCAAACA ACAAGGACCGTCTTTTTCAAAGCCACCGTGTTCGTAACATGATCGAAAATATCATTGCCACTACTGAGAAACTCGTTGAGGTTTATGAAGATAGAGATAA TGCGAGGAAAGATGAGATTGCGGCGCTTGGTGGACAAACGGCGACCGGAACCAATGTGTTTAGTGCTTTTTATGATAGATTAAAAGAGATTCGTGAGTAT CATAGAAGGCATCCAGCGGCGCGTGTGGTTGATGCTAATGAGGATTATGAGGCAATGCTTAAAGAGGAACCAGTTATTGAGTTTACTGGTGAGGAAGCAT TTGGGAAATACTTAGACATGCATGAATTGTATAACCAGTTCAATAATTTAAAATTCGAGAAGCCTATTGAATACTCTACTTACCTTGACATTTTCTCCCA ACCACATAATTTACCCCGTAAAGTGAAGTTTACAAGGCAATACAGGGAATACATGGAGAATCTACTTGAATATTTATTTTATTTTTTCCAGAGGACAGAG CCCTTGCAAGATCTTGATAGGATTTTGTCAAAGGTTACTACTGAATTTGAAGAGCAATGGGAAAATGGCACGGTACAAGGATGGGAAAAGAATGCTCAAG AAAATGGGCATGTGCCAGCTGATCATACTGTTATTGATCTTGATTTTTACAGCACTGTTGAGGAGCTTAAAGAAGTGGGCCCTGAAAAATTGAAGGAGGC ATTGGCTGCATTGGGGCTCAAGAGTGGCGGTACCATTCAGCAGCGTGCTGAAAGGCTTTTTCTCACGAAGCATACACCTCTTGAAAAGTTGGACAAGAAA CATTTTGTGAAAGGTTCATGTGCATCAGAACCGAATGGAGGTGCTGTGAACTCAAAGGAAGTTGTCAATTCAAAAGAAATTGCCCTGATGGAGACCAAAA TGAATAAATTGTGTGATTTACTGGATGAGACAATTGTACGGACAAAAGAAAATATTGTGAAGAAGCAGGCTTTGACATATGATGAAATGGAAGCAGAACG TGAGGAGGAAGAGACACAGGCTGACACTGAAAGTGACGATGAAGAACAACAGATTTACAATCCCCTCAAGTTGCCAATGGGTTGGGATGGGAAGCCTATA CCCTACTGGCTGTATAAACTTCATGGTCTTGGTCAGGAACTTAAATGCGAGATATGTGGGAACTATAGTTACTGGGGTCGTAGAGCGTTTGAGCGGCATT TCAAGGAATGGCGTCATCAGCATGGAATGCGTTGCCTTGGCATCCCAAACACCAAGAACTTCAATGAGATCACATCGATCGAGGAAGCACAGGAATTATG GAAGAGGATACAAGCGCGGCAAGGAGTGAACAAGTGGCGCCCAGATCTTGAGGAAGAATATGAAGATAAAGAGGGCAACATTTACAATAAAAAGACATAT ACTGATCTGCAGCGCCAGGGACTGATTTGA
AA sequence Show only first row Show all	>Potri.015G017200.4 pacid=42776649 polypeptide=Potri.015G017200.4.p locus=Potri.015G017200 ID=Potri.015G017200.4.v4.1 annot-version=v4.1 MSSTLLEVTRASHEEAERLERLIVKDLQNEPANNKDRLFQSHRVRNMIENIIATTEKLVEVYEDRDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREY HRRHPAARVVDANEDYEAMLKEEPVIEFTGEEAFGKYLDMHELYNQFNNLKFEKPIEYSTYLDIFSQPHNLPRKVKFTRQYREYMENLLEYLFYFFQRTE PLQDLDRILSKVTTEFEEQWENGTVQGWEKNAQENGHVPADHTVIDLDFYSTVEELKEVGPEKLKEALAALGLKSGGTIQQRAERLFLTKHTPLEKLDKK HFVKGSCASEPNGGAVNSKEVVNSKEIALMETKMNKLCDLLDETIVRTKENIVKKQALTYDEMEAEREEEETQADTESDDEEQQIYNPLKLPMGWDGKPI PYWLYKLHGLGQELKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAQELWKRIQARQGVNKWRPDLEEEYEDKEGNIYNKKTY TDLQRQGLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.015G017200 [exp]	0	1
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.012G012800 [exp]	2.00	0.8905
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.009G051400 [exp]	5.91	0.8771
AT3G61370			Protein of unknown function (D...		Potri.016G069200 [exp]	7.74	0.8833
AT2G17670			Tetratricopeptide repeat (TPR)...		Potri.005G103300 [exp]	7.74	0.8827
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.001G357800 [exp]	8.12	0.8715
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.010G131400 [exp]	12.32	0.8817
AT1G80750			Ribosomal protein L30/L7 famil...		Potri.001G047400 [exp]	12.32	0.8525
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	13.49	0.8679
AT1G03140			splicing factor Prp18 family p...		Potri.005G210600 [exp]	14.49	0.8462
AT4G21660			proline-rich spliceosome-assoc...		Potri.004G039000 [exp]	14.86	0.8531

Compare expression of checked genes

Potri.015G017200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.