Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GLT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53460 3664 / 0 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3) AT2G41220 1156 / 0 GLU2 glutamate synthase 2 (.1) AT5G04140 1150 / 0 GLS1, GLUS, GLU1, FD-GOGAT FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) AT4G32360 65 / 4e-10 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT1G62560 50 / 2e-05 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT5G61290 48 / 8e-05 Flavin-binding monooxygenase family protein (.1) AT1G63370 47 / 0.0002 Flavin-binding monooxygenase family protein (.1) AT1G62620 47 / 0.0002 Flavin-binding monooxygenase family protein (.1) AT5G14220 45 / 0.0008 HEMG2, MEE61, PPO2 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) AT1G12160 44 / 0.001 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G011700 [exp] 4048 / 0 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.006G038400 [exp] 1147 / 0 AT5G04140 2831 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.016G036900 [exp] 1138 / 0 AT5G04140 2813 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.015G017601 [exp] 142 / 8e-40 AT5G53460 119 / 3e-33 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.017G118801 [exp] 59 / 3e-08 AT4G32360 666 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.001G121100 [exp] 45 / 0.0004 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.012G067500 [exp] 45 / 0.0005 AT5G07800 696 / 0.0 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000390 [exp] 3783 / 0 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019020 [exp] 1269 / 0 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019021 [exp] 1244 / 0 AT5G53460 1273 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10010457 [exp] 1157 / 0 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10003820 [exp] 585 / 1e-176 AT2G41220 1401 / 0.0 glutamate synthase 2 (.1) Lus10015217 [exp] 62 / 6e-09 AT4G32360 661 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10031463 [exp] 60 / 2e-08 AT4G32360 659 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10003474 [exp] 48 / 0.0001 AT5G07800 623 / 0.0 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [poplar] [flax] NTN PF00310 [poplar] [flax] GATase_2 Glutamine amidotransferases class-II CL0052 [poplar] [flax] PF01493 [poplar] [flax] GXGXG GXGXG motif CL0036 [poplar] [flax] TIM_barrel PF01645 [poplar] [flax] Glu_synthase Conserved region in glutamate synthase CL0036 [poplar] [flax] TIM_barrel PF04898 [poplar] [flax] Glu_syn_central Glutamate synthase central domain CL0063 [poplar] [flax] NADP_Rossmann PF07992 [poplar] [flax] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0344 [poplar] [flax] 4Fe-4S PF14691 [poplar] [flax] Fer4_20 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster
Representative CDS sequence Show only first row Show all	>Potri.015G017500.1 pacid=42775029 polypeptide=Potri.015G017500.1.p locus=Potri.015G017500 ID=Potri.015G017500.1.v4.1 annot-version=v4.1 ATGTCGGCTGCAGCGAGCTCTGGAGCTCTCCTTCAACCAAAATCGGTGAAAGCTCCGTTTTCTTCGCTTAGTAAATCGTCTTCTCTTTCTCCTTCGCTCA ATGTTGCCACAGCAGCATCTGTTTCTCGGCGGAGCGCGAGGGCAAACCGATGTGCTTCGACGAGGAAATCGGTGGTTGTTGAGAGAAAATCGTTTTTGGG AAGTAAAGTTCGGGGGTCTGCTGGATCGGAGAGATTGCATTTTTGGCAGTCGGATGGACCGGGTAGAGAGCCGAAACTTCGAGTTGTTGTCCGGTCTGCA TTGTCCGGTGTGCCGGAGAAGCCGCTTGGGTTGTATGACCCGTCGTTTGATAAGGATTCGTGCGGGGTTGGTTTTGTGGCTGAATTATCCGGGGATAGCA GTCGTAAAACGGTAAATGATGCTTTGGAGATGTTGGTGAGGATGACACATAGAGGGGCTTGTGGATGTGAGACGAATACTGGTGATGGGGCTGGTATTCT TGTGGCTCTTCCTCATGATTTCTACAAGGAGGTTGCTAAGGATATAGGGTTCGAACTGCCACCACCAGGGGAATATGCAGTTGGCATGTTCTTTTTGCCC ACATCTGATAATCGTAAGGAAGAAAGCAAGAATGTATTCACTAAGGTTGCGGAGTCTCTTGGGCATACTGTACTTGGGTGGCGACCAGTACCAACAGATA ACTCTGGACTGGGAAATTCTGCTTTGCAGACCGAGCCTGTCATTGAGCAAGTGTTCCTTACAGCCACTCCTAGGTCGAAGGCTGATTTTGAGCAGCAGAT GTACATATTAAGGAGGGTGTCAATGGTAGCTATTAGAGCTGCACTAAACCTTCAATATGGTGGTGTTAGGGACTTTTATATCTGTTCCCTTTCCTCAAGG ACGGTTGTTTATAAAGGTCAGTTGAAGCCTGAACAGTTGAAGGGTTACTATTATGCAGATCTTGGCAATGAAAGGTTTACGAGCTACATGGCCCTGGTAC ACTCACGATTTTCAACAAATACATTTCCTAGCTGGGATCGTGCACAACCCATGCGTGTCTTGGGCCATAATGGGGAAATCAACACGCTAAGAGGCAATGT AAACTGGATGAAGGCTCGCGAGGGCCTAATAAAGTGCAAGGAGCTCGGTCTCTCGAAGAATGAGATGAAGAAGCTTCTTCCAATTGTAGATGCTAGTTCT TCCGACTCAGGGGCTTTTGATGGTGTGCTGGAGCTTTTAATTCGAGCTGGGAGAAGTCTCCCTGAAGCTGTCATGATGATGATTCCTGAAGCCTGGCAAA ATGACAAGAATATGGATCCTCAAAGGAGGGCACTGTACGAATACTTCTCAGCTCTTATGGAACCGTGGGATGGGCCTGCACTTATCTCATTTACTGATGG CCACTACTTGGGAGCTACTCTGGATCGCAATGGGTTACGTCCAGGAAGATTTTATGTTACACGAAGTGGACGAGTTATCATGGCTAGTGAAGTTGGTGTT GTGGATATTCCTCCTGAAGATGTCCTTAGGAAAGGAAGACTTAACCCTGGAATGATGCTTCTGGTGGATTTTGAGAAGCATATTATTGTAGATGATGAAG CCTTGAAGCAACAATATTCCCTAGCAAGGCCCTATGGAGAGTGGCTGAAGAGGCAAAAGATTGAACTCAGTGACATAGTTGACTCGGTTCAAGAATCTGA GAGAGTTGCTCCAGCCATTTCTGGGGTTGTTCCTGCATCTGATGATGACACCAGCATGCAGAATATGGGCACTCATGGTTTGCTGGCACCATTAAAAGCT TTTGGCTATACTGTTGAAGCCTTGGAGATGCTGATGCTTCCCATGGCAAAGGACGCTACAGAGGCTCTTGGTTCGATGGGAAATGATGCTCCCTTGGCTG TCATGTCTAACAGGGAAAAACTCACTTTCGAGTACTTCAAGCAAATGTTTGCTCAAGTGACAAACCCTCCAATTGATCCCATCAGAGAGAAGATTGTCAC TTCCATGGAATGCATGATTGGGCCAGAAGGTGATTTGACAGAAACAACTGAAGAACAATGCCACCGTCTCTCTCTAAAAGGCCCTCTTTTATCAATTGAG CAAATGGAAGCAATGAAAAAAATGAACTTTAGCGGTTGGCGAAGCAAAGTTCTCGACATAACTTATTCAAAGGAACGGGGTAGGAAGGGATTGGAGGAGA CTTTAGATAGGATTTGTGCTGAAGCTCACGAGGCAATCAAGGAAGGTTATACTGTGTTGGTTCTTTCTGACAGAGCCTTCTCATCAAAGCGTGTTGCTGC AAGCTCCCTCTTGGCTGTTGGCGCTGTCCACCAATATCTAGTAAAAAAGCTTGAGCGAACTCAAGTCGGGTTGATAGTTGAATCTGCTGAACCACGTGAA GTGCACCATTTCTGTACATTGGTTGGTTTTGGCGCAGATGCTATCTGCCCATACTTAGCTGTAGAGGCCATTTGGAGATTACAGGTTGATGGCAAGATCC CACCAAAATCCACTGGCGAGTTCCACACAAAGGATGAGCTAGTCAAGAAGTATTTCAAGGCAAGCAACTATGGCATGATGAAAGTGCTTGCCAAAATGGG AATTTCAACTTTGGCCTCCTACAAGGGTGCTCAGATTTTTGAAGGCCTGGGCCTTTCATCAGAAGTGATTGACAAGTGCTTTGCAGGAACTCCAAGCAGG GTAGAAGGAGCAACATTTGAGATGCTTGCCCGTGATTCACTTCATTTGCATGAGTTGGCATTTCCTTCCCGTGTTCTCCCTCCTGGAAGTGCAGAAGCTG TAGCACTGCCCAATCCGGGGGATTATCATTGGAGAAAAGGTGGTGAGATTCACCTTAATGATCCTCTTGCTATTGCAAAGCTTCAAGAAGCTGCCAGAGG TAATAGTGTGGCTGCCTATAAGGAATATTCTAAACGTGTTCAGGAGTTAAACAAAGCTTGTAATTTGCGTGGGCTTTTGAAGTTCAAAGAGGCAGATGTG AAAGTTTCTTTGGATGAAGTAGAACCAGCCAGTGAGATTGTTAAAAGGTTCTGTACTGGTGCAATGAGTTATGGATCAATATCATTGGAGGCACACACCA CACTGGCTCAGGCTATGAACAAAATTGGAGGAAAATCAAACACAGGTGAGGGAGGTGAACAACCATCTCGGATGGAGACTCTTCCTGATGGTTCAATGAA CCCAAAGAGGAGTGCAATTAAGCAGGTTGCAAGTGGGAGATTTGGAGTGTCAAGTTACTATCTTACAAATGCTGATGAGCTGCAGATAAAGATGGCTCAG GGTGCCAAGCCTGGTGAAGGAGGTGAGCTTCCTGGCCACAAGGTCATAGGAGACATTGCAATTACCAGAAATTCTACTGCAGGGGTGGGCCTCATTAGTC CTCCTCCCCATCATGATATCTATTCAATTGAAGACCTTGCTCAATTGATTCACGATCTCAAGAATGCCAATCCAGCAGCCAGAATAAGTGTTAAGTTGGT ATCTGAAGCTGGTGTCGGAGTCATTGCCAGTGGGGTGGTAAAGGGACATGCTGACCATGTTTTGATCTCAGGTCATGATGGAGGTACAGGTGCTTCTCGA TGGACTGGCATCAAGAACGCTGGGCTCCCATGGGAACTTGGTTTGGCTGAGACCCATCAAACACTTGTTGCCAATGACCTTCGTGGCCGAACAGTTCTTC AGACTGATGGCCAACTAAAAACTGGACGAGATGTGGCCATTGCAGCCCTTCTTGGCGCAGAAGAGTTTGGTTTCAGCACTGCACCCCTTATAACACTTGG TTGCATCATGATGCGAAAGTGCCATAAGAACACCTGCCCCGTAGGCATTGCTACTCAAGATCCAGTGCTGAGGGAAAAGTTTGCTGGAGAACCTGAACAT GTTATCAACTTCTTTTTTATGCTAGCAGAGGAGCTCAGGGAGATTATGGCACAGCTTGGTTTCCGTACGATGACTGAGATGGTTGGTCGTTCAGACATGC TTGAAGTTGATAAAGAAGTTGTTAAGAGCAACGAGAAGCTGGAAAATATTGATCTCTCTTTGTTACTTAGACCTGCTGCTGACATTCGACCTGAAGCTGC TCAGTATTGTGTCCAAAAGCAGGATCATGGTTTGGACATGGCATTGGATAATAAACTCATTAAACTCTCTGAGGCTGCATTGGAAAAAGGTCTTCCTGTA TACATTGAAACACCTATCTGCAATGTGAACCGTGCTGTTGGAACGATGCTTAGTCATGAAGTTACTAAGCGTTACCACTTGGCAGGGCTTCCCGCAGATA CTATTCACATCAAACTCACAGGAAGTGCTGGGCAGAGTCTAGGAGCTTTCCTTTGCCCTGGCATTATGCTGGAACTGGAAGGGGATGGCAATGACTACGT TGGTAAAGGATTATCAGGTGGGAAGATTGTAGTTTATCCTCCAAAAGGAAGCCTGTTTGATCCAAAAGAAAACATTGTGATCGGTAATGTAGCTCTTTAT GGAGCCACATGTGGTGAAGCATATTTCAATGGGATGGCAGCAGAAAGATTTTGTGTCCGTAATTCTGGGGCAAGGGCTGTTGTAGAAGGTGTTGGTGATC ATGGCTGTGAGTACATGACAGGTGGAACTGTTGTTGTGCTTGGGAAAACTGGAAGGAATTTTGCTGCTGGTATGAGTGGTGGTGTTGCTTATGTTCTTGA TTTGGATGGGAAATTCAGATCTCGTTGCAATCCTGAACTCGTAGATCTTGACAAAGTCGAGGAAGAGGAGGACATTACAACTCTAAAAATGATGATACAA CAACACCAGCGTCACACAAATAGCCTGCTAGCTAGAGAAGTACTTGCTGATTTTGATAATCTTCTACCTAAATTTATTAAGGTCTTCCCGAGGGATTACA AACGTGTTCTTGCCAACATGAAAGAGGAATCTGCCACAAAAGAGGCTGCTGACCTAGCTGCTAAAGAAGTTGAGGAAGCTGAGGAGCAAGATGAAGCAGA GTTGAAGGAGAAAGATGCTTTTGAGGAGCTAAAGAAGCTGGCAGCTGCATCTTTGAATGGGAATTCCATTCAGGTAGAAGATGGACCTCTGAAAAGGCCT ACCCGTGTTAATGATGCTGTTAAACATCGAGGGTTTATTGCTTATGAGCGAGAAGGTGTTCAGTACAGAGATCCAAATATTCGAATGAATGACTGGAAGG AAGTTACTGAGGAGTCAAAACCTGGCCCTCTTTTAAAGACCCAGTCAGCCCGTTGCATGGACTGTGGCACTCCTTTCTGTCACCAGGAGAACTCAGGATG CCCTCTTGGAAACAAAATCCCTGAATTTAATGAGCTAGTGCATCAAAATCGGTGGCGTGAAGCATTAGATAGGTTACTTGAGACAAATAACTTCCCAGAG TTCACTGGCAGAGTGTGCCCTGCACCCTGTGAAGGTTCCTGTGTTCTTGGGATAATTGATGATCCAGTATCTATAAAAAACATTGAATGTTCAATTATTG ACAAGGCCTTTGAGGAGGGTTGGATGGTTCCGCGGCCTCCCCTCAAGAGAACTGGGAGACGAGTGGCTATTGTTGGAAGCGGGCCTTCTGGTTTGGCTGC TGCTGATCAACTAAACAAAATGGGTCATTTGGTGACTGTGTATGAGCGTGCTGATCGAATTGGAGGGCTAATGATGTATGGAGTTCCCAACATGAAAACT GACAAAGTGGATATAGTTCAACGGCGTGTTAACCTTATGTCTGAGGAAGGCATCAATTTTGTGGTAAATGCTAATGTTGGAATTGATCCTTTGTATTCTC TTGATCGGCTTCGAGATGAGAACAATGCGATTGTTTTGGCAGTGGGAGCCACAAAACCAAGGGACCTTCCGGTACCTGGTCGGGAGTTGTCAGGCGTCCA TTTTGCTATGCAGTTTCTTCATGCAAATACCAAAAGTTTGCTTGACAGCAATTTGCAGGATGGTAACTACATATCCGCAAAGGGCAAGAAAGTTGTTGTC ATTGGTGGAGGTGACACTGGAACAGATTGCATTGGGACATCTATTCGCCATGGGTGTAGTAGCATTGTAAATCTAGAGCTTCTACCTGAGCCACCACGAA CTAGAGGTCCGGGCAACCCTTGGCCACAGTGGCCTAGAGTATTCCGGGTAGACTATGGGCACCAGGAAGCTGCCGCCAAGTTCGGGAAAGACCCGAGGTC TTATGAGGTGTTGACTAAGCGTTTCATTGGAGATGAGAATGGGAATGTGAAAGGACTTGAGCTGGTACGTGTCCATTGGGAGAAGGATGCCACAGGGAAA TTTCAATTTAAGGAGGTTGAGGGCTCCGAGGAAGTTATTGAGGCTGACCTAGTCCTACTAGCAATGGGATTCCTTGGTCCTGAGCTGAATGTGGCAGAGA AGTTGGGCTTGGAGCAAGATAATAGATCGAATTTCAAGGCAGAATATGGCCGCTTCTCAACCAATGTGGAAGGGATCTTTGCAGCTGGGGATTGCAGGCG AGGCCAGTCCCTAGTTGTATGGGCAATATCAGAGGGACGACAAGCTGCTTCCCAGGTGGACAAATATCTCATGAAAGAAGAGGATGCTACCATTAACACC GATAATACTCAGGATGACCTTGTCAAGAGGCACCAGGACCTCACCAAGAGACATCAAGACAGCAGCAAGCACACTGTCATGACGTAG
AA sequence Show only first row Show all	>Potri.015G017500.1 pacid=42775029 polypeptide=Potri.015G017500.1.p locus=Potri.015G017500 ID=Potri.015G017500.1.v4.1 annot-version=v4.1 MSAAASSGALLQPKSVKAPFSSLSKSSSLSPSLNVATAASVSRRSARANRCASTRKSVVVERKSFLGSKVRGSAGSERLHFWQSDGPGREPKLRVVVRSA LSGVPEKPLGLYDPSFDKDSCGVGFVAELSGDSSRKTVNDALEMLVRMTHRGACGCETNTGDGAGILVALPHDFYKEVAKDIGFELPPPGEYAVGMFFLP TSDNRKEESKNVFTKVAESLGHTVLGWRPVPTDNSGLGNSALQTEPVIEQVFLTATPRSKADFEQQMYILRRVSMVAIRAALNLQYGGVRDFYICSLSSR TVVYKGQLKPEQLKGYYYADLGNERFTSYMALVHSRFSTNTFPSWDRAQPMRVLGHNGEINTLRGNVNWMKAREGLIKCKELGLSKNEMKKLLPIVDASS SDSGAFDGVLELLIRAGRSLPEAVMMMIPEAWQNDKNMDPQRRALYEYFSALMEPWDGPALISFTDGHYLGATLDRNGLRPGRFYVTRSGRVIMASEVGV VDIPPEDVLRKGRLNPGMMLLVDFEKHIIVDDEALKQQYSLARPYGEWLKRQKIELSDIVDSVQESERVAPAISGVVPASDDDTSMQNMGTHGLLAPLKA FGYTVEALEMLMLPMAKDATEALGSMGNDAPLAVMSNREKLTFEYFKQMFAQVTNPPIDPIREKIVTSMECMIGPEGDLTETTEEQCHRLSLKGPLLSIE QMEAMKKMNFSGWRSKVLDITYSKERGRKGLEETLDRICAEAHEAIKEGYTVLVLSDRAFSSKRVAASSLLAVGAVHQYLVKKLERTQVGLIVESAEPRE VHHFCTLVGFGADAICPYLAVEAIWRLQVDGKIPPKSTGEFHTKDELVKKYFKASNYGMMKVLAKMGISTLASYKGAQIFEGLGLSSEVIDKCFAGTPSR VEGATFEMLARDSLHLHELAFPSRVLPPGSAEAVALPNPGDYHWRKGGEIHLNDPLAIAKLQEAARGNSVAAYKEYSKRVQELNKACNLRGLLKFKEADV KVSLDEVEPASEIVKRFCTGAMSYGSISLEAHTTLAQAMNKIGGKSNTGEGGEQPSRMETLPDGSMNPKRSAIKQVASGRFGVSSYYLTNADELQIKMAQ GAKPGEGGELPGHKVIGDIAITRNSTAGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARISVKLVSEAGVGVIASGVVKGHADHVLISGHDGGTGASR WTGIKNAGLPWELGLAETHQTLVANDLRGRTVLQTDGQLKTGRDVAIAALLGAEEFGFSTAPLITLGCIMMRKCHKNTCPVGIATQDPVLREKFAGEPEH VINFFFMLAEELREIMAQLGFRTMTEMVGRSDMLEVDKEVVKSNEKLENIDLSLLLRPAADIRPEAAQYCVQKQDHGLDMALDNKLIKLSEAALEKGLPV YIETPICNVNRAVGTMLSHEVTKRYHLAGLPADTIHIKLTGSAGQSLGAFLCPGIMLELEGDGNDYVGKGLSGGKIVVYPPKGSLFDPKENIVIGNVALY GATCGEAYFNGMAAERFCVRNSGARAVVEGVGDHGCEYMTGGTVVVLGKTGRNFAAGMSGGVAYVLDLDGKFRSRCNPELVDLDKVEEEEDITTLKMMIQ QHQRHTNSLLAREVLADFDNLLPKFIKVFPRDYKRVLANMKEESATKEAADLAAKEVEEAEEQDEAELKEKDAFEELKKLAAASLNGNSIQVEDGPLKRP TRVNDAVKHRGFIAYEREGVQYRDPNIRMNDWKEVTEESKPGPLLKTQSARCMDCGTPFCHQENSGCPLGNKIPEFNELVHQNRWREALDRLLETNNFPE FTGRVCPAPCEGSCVLGIIDDPVSIKNIECSIIDKAFEEGWMVPRPPLKRTGRRVAIVGSGPSGLAAADQLNKMGHLVTVYERADRIGGLMMYGVPNMKT DKVDIVQRRVNLMSEEGINFVVNANVGIDPLYSLDRLRDENNAIVLAVGATKPRDLPVPGRELSGVHFAMQFLHANTKSLLDSNLQDGNYISAKGKKVVV IGGGDTGTDCIGTSIRHGCSSIVNLELLPEPPRTRGPGNPWPQWPRVFRVDYGHQEAAAKFGKDPRSYEVLTKRFIGDENGNVKGLELVRVHWEKDATGK FQFKEVEGSEEVIEADLVLLAMGFLGPELNVAEKLGLEQDNRSNFKAEYGRFSTNVEGIFAAGDCRRGQSLVVWAISEGRQAASQVDKYLMKEEDATINT DNTQDDLVKRHQDLTKRHQDSSKHTVMT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.015G017500 [exp]	0	1	GLT1.2
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059800 [exp]	2.23	0.7963	RALFL32.1
AT3G58900			F-box/RNI-like superfamily pro...		Potri.017G119200 [exp]	3.16	0.7905
AT5G24320			Transducin/WD40 repeat-like su...		Potri.001G086600 [exp]	4.24	0.7201
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	5.91	0.7286
					Potri.010G220800 [exp]	5.91	0.7451
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.006G108300 [exp]	10.19	0.7568
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.008G038200 [exp]	11.74	0.7888	Pt-PAL.2,PAL2
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	12.32	0.6920
AT2G41700		AtABCA1, ABCA1	Arabidopsis thaliana ATP-bindi...		Potri.006G049300 [exp]	13.26	0.7270
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	14.69	0.6746

Compare expression of checked genes

Potri.015G017500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.