Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 354 / 3e-114 Protein kinase superfamily protein (.1.2) AT1G66910 344 / 9e-110 Protein kinase superfamily protein (.1) AT5G38260 339 / 3e-108 Protein kinase superfamily protein (.1) AT5G38280 336 / 8e-107 PR5K PR5-like receptor kinase (.1) AT1G66930 331 / 9e-105 Protein kinase superfamily protein (.1) AT1G66980 341 / 1e-104 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G67000 333 / 3e-103 Protein kinase superfamily protein (.1) AT5G39020 329 / 2e-102 Malectin/receptor-like protein kinase family protein (.1) AT1G70250 328 / 2e-102 receptor serine/threonine kinase, putative (.1) AT4G18250 327 / 3e-101 receptor serine/threonine kinase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018200 [exp] 954 / 0 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 940 / 0 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 932 / 0 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 915 / 0 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.007G125600 [exp] 686 / 0 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.017G035500 [exp] 686 / 0 AT1G66920 336 / 2e-107 Protein kinase superfamily protein (.1.2) Potri.012G003400 [exp] 663 / 0 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2) Potri.007G126200 [exp] 624 / 0 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 577 / 0 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014923 [exp] 672 / 0 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025553 [exp] 591 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10025547 [exp] 540 / 0 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 471 / 6e-161 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 379 / 2e-123 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 337 / 7e-108 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 336 / 1e-106 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008335 [exp] 337 / 4e-106 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 322 / 2e-105 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10027085 [exp] 271 / 2e-86 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G018000.1 pacid=42774793 polypeptide=Potri.015G018000.1.p locus=Potri.015G018000 ID=Potri.015G018000.1.v4.1 annot-version=v4.1 ATGGAGCTGAAAATATTCCAAGTCATGGACATGGATCTCTCTTTACTTTGCTTGTTATTGCTACTCCTTGTAAGCCATGGAGTTGGCCTTAAAGATATGT GCCAAGAAGCAAGGTGTAAGAAGCATGGTCCCGTCATAAGATTCCCGTTTAGAATCAAAGGCAAGCAGCCAGATTACTGTGGCTATCCTGGGTTTGATCT ATCTTGCACTGACAGGAAAGAAACATTGTTGGAGCTGCCAACTTCAGTGAAACTCTACATCAATAATATTGATTATGCATCAGAGTTGATCACTGCAACT GATCCAGAAAACTGCCTTCCAAGGCAGCTCCTGAACTTCAATTTATCAACATCTCCTTTCAAATTTGCAGCACAGTTACAGAGGGACTTGGACTTTTTCA ACTGCACTTCAAGGCGGAGAGACTCTTATCTATGGACGTCTTGCCTTGGTGTTCCAGGATATGATATTTATGCCTTTATGTCTGGTAGTATCGTTACTTA TTTCGACCTGACTTCTTGTAGCAAGATGTATAACCTTTCATCGGTTCCAGATGATTTAAATAGCAGGGACAACATTCTTCATTTGAATTGGTCAAGACCG GCATGTGGACTTTGTGGTGCACTGGGTAAGTTCTGCAGATTGAAGAATAACACAGATAGGATCGAGACTGAATGCTATGACAAGCCTAAATCAAATGAAG GCATAATAAAAAAGATAGTGGCTGCAGTAATAACTGTTGGTTCAGCTATTCTGCTGCTGATACTCTTTGCGCTCTATCGTGTCTACAGCTCCGACAAAGC AGCAAAACAACATCAGAAAAGGATTGAAATTTTTTTGGCAGATTATAAAGCTCTCAAGCCCGCTAGATACACTTATGCTGACATAAAAAGGATTACAAAT GATTTCAAGGAGAAATTGGGTCAGGGTGCATATGGAACTGTGTTTAAAGGAAAGCTTTCTAATGAGATCTTTGTAGCTGTGAAGATCCTGAACAATTCAA CAGGGAATGGTGAAGAGTTCGTTAACGAAGTGGGAACAATGGGAAGAATTCATCATGTCAACATTGTTCGATTAGTCGGTTACTGTGCTGATGGATTTAG AAGAGCTCTAGTTTACGACTACCTGCCAAATGAATCACTAGAGAAATTTGTATCTTCAGAACACGGCAAGACCTGTCCTCTTAGTTGGGAGAAACTTCAG GATATTGCTCTTGGCATAGCTAGGGGAATAGAGTATCTTCACCAAGGTTGTGATCAGCGAATCCTCCATTTCGACATCAAACCTCATAATATCTTGCTAG ACGATAATTTCAGTCCAAAAATTTCTGATTTTGGTCTGGCGAAACTATGTTCCAAGGATCAGAGTGCTGTTTCCATGACTACAGCTAGAGGAACCATGGG GTACATTGCACCTGAAGTTTTCTCTAGGAACTTTGGGAATGTGTCCTCCAAGTCAGATGTTTATAGTTATGGAATGGTGTTGCTTGAAATGGTTGGAGGA AGGAAAACTGTCGATAAAGAAGTAGAGAACAACACCCAAATCTACTTCCCTGAATGGGTCTACAACAGCCTGGATAACGGAGAAGAGCTGATAATCCGGG TTGAAAAGGAGGGAGATGCACAAATTGCAAAGAAGCTGACAATTGTTGGTTTATGGTGCATTCAGTGGCACCCTGTGGAGCGTCCCTCAATGAATACTGT AGTTCAAATGTTGGAAGGAGAAGGAGACAAATTAACAATGCCTCCTAGCCCTTTTTCGTCGGCGGGTCCAGGAAGAATGAAATCACATTTACCAGGGAGA CCTCTTCATCAGATTTTGGAAGTGATATCTGAAACAGATTGA
AA sequence Show only first row Show all	>Potri.015G018000.1 pacid=42774793 polypeptide=Potri.015G018000.1.p locus=Potri.015G018000 ID=Potri.015G018000.1.v4.1 annot-version=v4.1 MELKIFQVMDMDLSLLCLLLLLLVSHGVGLKDMCQEARCKKHGPVIRFPFRIKGKQPDYCGYPGFDLSCTDRKETLLELPTSVKLYINNIDYASELITAT DPENCLPRQLLNFNLSTSPFKFAAQLQRDLDFFNCTSRRRDSYLWTSCLGVPGYDIYAFMSGSIVTYFDLTSCSKMYNLSSVPDDLNSRDNILHLNWSRP ACGLCGALGKFCRLKNNTDRIETECYDKPKSNEGIIKKIVAAVITVGSAILLLILFALYRVYSSDKAAKQHQKRIEIFLADYKALKPARYTYADIKRITN DFKEKLGQGAYGTVFKGKLSNEIFVAVKILNNSTGNGEEFVNEVGTMGRIHHVNIVRLVGYCADGFRRALVYDYLPNESLEKFVSSEHGKTCPLSWEKLQ DIALGIARGIEYLHQGCDQRILHFDIKPHNILLDDNFSPKISDFGLAKLCSKDQSAVSMTTARGTMGYIAPEVFSRNFGNVSSKSDVYSYGMVLLEMVGG RKTVDKEVENNTQIYFPEWVYNSLDNGEELIIRVEKEGDAQIAKKLTIVGLWCIQWHPVERPSMNTVVQMLEGEGDKLTMPPSPFSSAGPGRMKSHLPGR PLHQILEVISETD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66920			Protein kinase superfamily pro...		Potri.015G018000 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G191900 [exp]	1.00	0.8949	Pt-GT2.2
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	3.16	0.8821
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.011G071700 [exp]	3.46	0.8366	HSFA4.1
AT5G10290			leucine-rich repeat transmembr...		Potri.005G074200 [exp]	4.00	0.8784
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	5.91	0.8764
AT4G31980			unknown protein		Potri.003G208300 [exp]	6.48	0.8743
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	7.34	0.8497
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.001G278600 [exp]	7.54	0.7977
AT5G40460			unknown protein		Potri.008G187300 [exp]	10.24	0.8238
AT5G67640			unknown protein		Potri.007G006000 [exp]	10.39	0.8191

Compare expression of checked genes

Potri.015G018000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.