Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 352 / 7e-113 Protein kinase superfamily protein (.1.2) AT5G38280 351 / 5e-112 PR5K PR5-like receptor kinase (.1) AT1G66910 348 / 5e-111 Protein kinase superfamily protein (.1) AT5G38260 345 / 5e-110 Protein kinase superfamily protein (.1) AT1G66930 333 / 6e-105 Protein kinase superfamily protein (.1) AT1G70250 335 / 1e-104 receptor serine/threonine kinase, putative (.1) AT1G67000 335 / 8e-104 Protein kinase superfamily protein (.1) AT4G18250 328 / 3e-101 receptor serine/threonine kinase, putative (.1) AT1G66980 333 / 4e-101 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39020 324 / 2e-100 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125450 [exp] 689 / 0 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125800 [exp] 672 / 0 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 670 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.017G009100 [exp] 656 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.007G126100 [exp] 645 / 0 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.017G009400 [exp] 636 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 627 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G008800 [exp] 624 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009500 [exp] 605 / 0 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014924 [exp] 724 / 0 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025492 [exp] 637 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008362 [exp] 504 / 3e-173 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025554 [exp] 483 / 1e-165 AT5G38260 220 / 2e-64 Protein kinase superfamily protein (.1) Lus10022359 [exp] 486 / 2e-165 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 439 / 3e-145 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 425 / 4e-145 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025553 [exp] 404 / 8e-133 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 382 / 1e-124 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10027085 [exp] 351 / 4e-117 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.015G018600.1 pacid=42775809 polypeptide=Potri.015G018600.1.p locus=Potri.015G018600 ID=Potri.015G018600.1.v4.1 annot-version=v4.1 ATGTCTGCAACAAAGATCCTCCTTGCCAGTCACACAGGCACAGCTCTTCTTCTCTTTCTCATCATATGTATCCAAGTCCAAACTTGCACATCACAGACTA ATCATGTTTGTGCTCCTTCTTCTTGTGGCAGTCTCCATAACATCAGCTTGCCTTTTAGGCTAAAAGGGGATCCACCAAACTGTGGTTTCTCTTTCTACGA GCTATCATGTGAGAACAATCAGACAGTCCTGTACATGTATTCAGGAAGATACCTTGTACAGTCCATTAATTACAATAACTCCACAATTAGAGTTGTTGAT TCCAATGTTAATAAGGGTAACTGCTCCTCTCTCCCTCAGCATTCTTTGACAGGAAGCAACTTCAGTTACGCAGACCCTTTTGATTGGCGAACCTCTTTTT GGTCACCCAGTAATGAATCACAGAAGATAATGATGTTCATGAAGTGTGCGAATCCGGTGAAGTCTCCTCTTTATATGGACACTGCTCCTTGCATCAATGG AACAAATTCTTATGTTCTAATTGAGGCCAATTTGTCATATGTGGAGAACTTGTGCAGAGTGGAGCTAATTGCTATGTCATCGTTGCCGATAAAAGATTAC AGAAACATTTCCTACATGGACATCCACAATAGACTTGTCTATGGATTTGAGCTTTGGTGGAATGAGGTAAACTGTGGAATTTGCAAAGGAAAAGAAAAGT GCTACCTCCCAAGCAAAGGTTTTTCCTGTCCCACAGAAAGTATATTTGACCAAATAATCACCCAAATCAGATTACTTTGGTGGTTTATATTGATGATGAT TGCGGGACTCATCATTGCAAGAACTGTACTATGCAGTCCATTTGTGTTCGCATTCTTGATATATAAATGGCTAAGGAGACATTTATCGATGTATGACATT ATTGAAGAATTTTTGCAAAGTCAAAATAACTTTGCACCTATAAGGTACTCTTACTCGGATATTAAGAAGATAACCAATGGTTTCAAGGAAAAGTTAGGTC AAGGAGGCTATGGATCTGTCTATAAAGGGAAGCTCCGTAGTGGACATCTTGCAGCAGTAAAGATGCTGGACAAGTCCAGTGCAAATGGTCAAGATTTCAT CAATGAAGTAGCAACAATTGGAAGGATTCACCATGTTAATGTTGTGAGATTAATCGGCTTTTGTGCTGAGGGATCAAAGCGTGCGCTTGTATATGATTTC ATGCCTAATGGATCGCTTGACAAATATGTTCTATCTCGACAAGGGAATACCATTTTAAGCTGGCAAAAAATGTATGAAATTTCTCTGGGAGTGGCTCGTG GCATTGAATATTTACACAGAGGTTGTGACATGCAGATTCTACATTTTGACATTAAGCCTCACAATGTTCTTCTTGATGAGAATTTCGCTCCAAAAGTTTC TGATTTTGGACTTGCAAAATTATATCCTACAAATAACAACACTGTCATGCTTACTGCGGCAAGAGGAACACTAGGATACATAGCACCAGAATTGTTCTAC AAAAACATCGGTAGTGTTTCCTACAAAGCTGATGTTTATAGTTTTGGTATGTTGTTAATGGAAATGGTTGGAAAGAGACATAGTACAAATCCGGTGACAG AGAGTAACAGCGAAAACTACTTCCCTGACTGGGTTTACAACCAAGTTGTTGATGGAAGGGTTGAAATTGCAGATGCTACAAAAGATGAAAATAAATTGGC AAAGAAGATTATTATAGTGGCACTGTGGTGCATACAAATGAAGCCTATTAATCGTCCTCCAATGAACAAAGTTGTGGAGATGCTTGAAGGAGATGTTGAA AGCCTAGAATTTCCTCCAAAACCTGTTCTATTTCCAGATGAAACACCTACGAATTACACTTACTCTACGGACGAAACATGTTCATCTTCTATGCTATTTG ACTCGAATGAAACAATTAGTTTACTTATAAACTCTGGTTGA
AA sequence Show only first row Show all	>Potri.015G018600.1 pacid=42775809 polypeptide=Potri.015G018600.1.p locus=Potri.015G018600 ID=Potri.015G018600.1.v4.1 annot-version=v4.1 MSATKILLASHTGTALLLFLIICIQVQTCTSQTNHVCAPSSCGSLHNISLPFRLKGDPPNCGFSFYELSCENNQTVLYMYSGRYLVQSINYNNSTIRVVD SNVNKGNCSSLPQHSLTGSNFSYADPFDWRTSFWSPSNESQKIMMFMKCANPVKSPLYMDTAPCINGTNSYVLIEANLSYVENLCRVELIAMSSLPIKDY RNISYMDIHNRLVYGFELWWNEVNCGICKGKEKCYLPSKGFSCPTESIFDQIITQIRLLWWFILMMIAGLIIARTVLCSPFVFAFLIYKWLRRHLSMYDI IEEFLQSQNNFAPIRYSYSDIKKITNGFKEKLGQGGYGSVYKGKLRSGHLAAVKMLDKSSANGQDFINEVATIGRIHHVNVVRLIGFCAEGSKRALVYDF MPNGSLDKYVLSRQGNTILSWQKMYEISLGVARGIEYLHRGCDMQILHFDIKPHNVLLDENFAPKVSDFGLAKLYPTNNNTVMLTAARGTLGYIAPELFY KNIGSVSYKADVYSFGMLLMEMVGKRHSTNPVTESNSENYFPDWVYNQVVDGRVEIADATKDENKLAKKIIIVALWCIQMKPINRPPMNKVVEMLEGDVE SLEFPPKPVLFPDETPTNYTYSTDETCSSSMLFDSNETISLLINSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66920			Protein kinase superfamily pro...		Potri.015G018600 [exp]	0	1
AT4G38260			Protein of unknown function (D...		Potri.004G206300 [exp]	2.00	0.8817
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	3.87	0.8790	CNGC.1
AT4G20325			unknown protein		Potri.006G280600 [exp]	4.58	0.8859
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Potri.010G195500 [exp]	5.29	0.8564
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050240 [exp]	6.32	0.8731
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	8.24	0.8761
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Potri.010G225701 [exp]	8.66	0.8553
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	9.38	0.8687
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	10.00	0.8643
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	10.67	0.8702

Compare expression of checked genes

Potri.015G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.