Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49170 1040 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 572 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 561 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 561 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 541 / 2e-180 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 538 / 2e-179 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 538 / 1e-178 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G16480 538 / 8e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G22070 527 / 2e-175 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G09950 531 / 1e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 662 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 597 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 595 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 595 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 578 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 576 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 567 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 561 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 560 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004253 [exp] 1005 / 0 AT3G49170 832 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 624 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 620 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 587 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 585 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 584 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042161 [exp] 573 / 0 AT3G49170 484 / 1e-163 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 568 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 560 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 547 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.015G018700.2 pacid=42775333 polypeptide=Potri.015G018700.2.p locus=Potri.015G018700 ID=Potri.015G018700.2.v4.1 annot-version=v4.1 ATGGACCTCTTCAGACATCAAATTGTCATAACGAAACGAACAATGATAAGTCTCTCTCTACCTTCTTCTCCCGCCAAAACCCATCTACCTTCTCCAAAAC CCACTAACCACCCTTCCCGCCAAAAACCTCCATCGTCAACAACCTTCAAACCCCAAAACAGCAGCTTCTACTCCCTCAAGGACCGTCTGTTTCACCACCT TAATGCGGGTCATCTCCAGAAAGCAATCTCGACCCTTGATCAAATGTCCCAAAAAGGGACCCACCCAGACCTCATCACTTACTCTCTCCTCCTCAAATCC TGCATCAGGTCACATAATTACCAACTGGGTCACCTCGTCCATCATCGTTTGACTCAGTCGGGACTCGAGCTTGACTCGGTCATTTTGAACTCTTTAATCA GTCTCTACTCAAAATGTGGTGATTGGCAACAAGCACATGAAATCTTTGAAAGTATGGGAAATAAGAGAGATTTGGTGTCATGGAGCGCATTGATTTCTTG TTATGCTAATAATGAGAAAGCATTTGAGGCTATTAGTGCTTTTTTTGACATGCTTGAATGTGGGTTTTATCCTAATGAGTATTGTTTTACTGGGGTTTTT CGGGCATGTTCGAACAAAGAGAACATTTCGCTTGGGAAAATCATTTTTGGGTTTTTGTTAAAAACTGGGTATTTTGAGTCTGATGTGTGTGTGGGTTGTG CTTTGATTGATATGTTTGTGAAGGGGAATGGTGATTTGGAATCTGCTTATAAGGTGTTTGATAGAATGCCTGACAGAAATGTGGTTACTTGGACTTTGAT GATAACTAGGTTTCAACAATTGGGATTTTCAAGGGATGCTGTTGATTTGTTTTTAGATATGGTTCTAAGTGGATATGTCCCGGATAGGTTTACGTTAAGT GGGGTTGTTTCGGCTTGTGCTGAAATGGGTTTGTTGTCGCTAGGGAGGCAATTCCATTGTTTGGTTATGAAGTCAGGGTTGGATCTGGATGTTTGTGTTG GGTGTAGTTTGGTGGATATGTATGCAAAGTGTGTGGCGGATGGGTCTGTTGATGATGCTAGGAAAGTGTTTGATAGGATGCCTGTTCATAATGTTATGTC TTGGACTGCAATTATCACGGGATATGTGCAGAGTGGTGGGTGTGATAGGGAAGCAATTGAACTCTTCTTGGAAATGGTTCAGGGACAAGTTAAACCGAAC CATTTCACATTTTCTAGCGTTCTCAAGGCATGTGCAAATCTTTCTGATATTTGGCTTGGTGAACAGGTTTATGCACTTGTGGTTAAAATGAGGCTTGCGT CGATTAATTGTGTTGGGAATTCTCTTATTAGCATGTATTCTCGGTGTGGTAACATGGAAAATGCTAGGAAAGCCTTTGATGTTCTGTTTGAGAAGAATTT GGTTTCTTATAATACGATCGTTAATGCATATGCCAAGAGTTTGAATTCTGAAGAAGCATTTGAACTGTTTAATGAAATTGAGGGTGCAGGGACTGGGGTT AATGCTTTCACGTTTGCTAGTCTCTTAAGTGGAGCTTCTAGCATTGGAGCAATTGGTAAGGGCGAGCAAATCCATTCTCGGATACTGAAATCTGGTTTTA AGTCAAACCTTCACATTTGTAATGCTCTGATCTCCATGTACTCTAGGTGCGGAAATATAGAAGCTGCTTTCCAAGTTTTTAATGAGATGGGAGATGGCAA TGTTATATCCTGGACATCAATGATCACAGGGTTTGCAAAACATGGATTTGCAACAAGAGCTCTGGAAACCTTCCATAAAATGCTAGAAGCAGGTGTGAGC CCAAATGAGGTCACCTATATTGCTGTTTTATCAGCTTGTAGCCATGTGGGTTTGATTTCTGAGGGATTGAAACACTTCAAGTCAATGAAGGTAGAACATG GGATTGTTCCGAGAATGGAACATTACGCATGTGTGGTGGATTTATTGGGTCGATCAGGACATCTTGAAGAAGCAATGGAGCTTGTTAACTCAATGCCCTT CAAGGCCGATGCCTTGGTCCTCCGTACATTTCTGGGAGCATGCCGAGTTCATGGCAACATGGATCTCGGGAAACATGCTGCAGAGATCATTCTTGAGCAG GATCCACATGATCCAGCAGCATATATCCTACTTTCAAACTTGCATGCTTCAGCTGGTCAATGGGAAGAGGTGGCTGAAATAAGAAAGAAAATGAAGGAGA GAAATTTGACTAAAGAAGCTGGTTGTAGCTGGATAGAAGTGGAAAACAAGGTGCACAAGTTCTATGTTGGGGATACTTCACACCCACAAGCACAAGAGAT TTATGATGAACTAGATCAATTGGCTTTGAAAATAAAGGAATTAGGCTATATTCCCAGCACAGATTTTGTTCTTCATGATGTGGAAGAAGAACAGAAGGAG CAATACTTGTTCCAGCACAGTGAGAAAATTGCTGTTGCATATGGTTTTATAAGCACATCAACATCTAGACCTATAAGGGTGTTCAAAAATCTTCGCGTCT GCGGAGATTGTCACACAGCATTCAAATACTTCTCTATTGTCAGAAGGAAAGAAATAGTGTTAAGGGATGCCAATAGATTTCATCATTTCAAGGATGGAAC CTGCTCCTGCAATGATTACTGGTAA
AA sequence Show only first row Show all	>Potri.015G018700.2 pacid=42775333 polypeptide=Potri.015G018700.2.p locus=Potri.015G018700 ID=Potri.015G018700.2.v4.1 annot-version=v4.1 MDLFRHQIVITKRTMISLSLPSSPAKTHLPSPKPTNHPSRQKPPSSTTFKPQNSSFYSLKDRLFHHLNAGHLQKAISTLDQMSQKGTHPDLITYSLLLKS CIRSHNYQLGHLVHHRLTQSGLELDSVILNSLISLYSKCGDWQQAHEIFESMGNKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVF RACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLS GVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPN HFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGV NAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVS PNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEIILEQ DPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKE QYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Potri.015G018700 [exp]	0	1
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	2.64	0.9523
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	4.00	0.9435
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	6.00	0.9434
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	6.32	0.9475	CRR2.1
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	6.78	0.9507
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.016G085300 [exp]	7.21	0.9490
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.018G040100 [exp]	7.48	0.9368
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	8.36	0.9443
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	10.53	0.9494
AT1G77405			Pentatricopeptide repeat (PPR)...		Potri.002G080300 [exp]	11.74	0.9254

Compare expression of checked genes

Potri.015G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.