Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53120 545 / 0 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6) AT1G23820 399 / 1e-138 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 389 / 2e-135 SPDS2 spermidine synthase 2 (.1) AT5G19530 107 / 3e-26 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002600 [exp] 655 / 0 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.010G094600 [exp] 400 / 1e-139 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.008G147200 [exp] 396 / 3e-138 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G089200 [exp] 100 / 2e-23 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 98 / 8e-23 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 93 / 3e-21 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019016 [exp] 572 / 0 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10003398 [exp] 563 / 0 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Lus10029169 [exp] 396 / 7e-138 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 392 / 1e-136 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10030629 [exp] 385 / 2e-134 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10012996 [exp] 379 / 9e-131 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 367 / 1e-126 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10018259 [exp] 309 / 2e-104 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2) Lus10040649 [exp] 115 / 7e-30 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2) Lus10010538 [exp] 111 / 1e-27 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01564 [poplar] [flax] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Potri.015G018900.1 pacid=42776243 polypeptide=Potri.015G018900.1.p locus=Potri.015G018900 ID=Potri.015G018900.1.v4.1 annot-version=v4.1 ATGGAGGGCGGCGCAGGAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGTGAATAACGGGAATAGTTCAGAGAAGGCTATTCCTTCTTGTTGCT TGAAGGCTAAGGCATCTGCCCCTGAGCTTGATGCAAAATGCCACTCTACAGTTGTTTCTGGGTGGTTCTCAGAATCTCATTCTTGCTCTGGTAAAGCTAG CAAAAGGGTTTACTTCAACAACCCCATGTGGCCCGGAGAAGCACACACATTGGAAGTGAAAGAGATTTTTTACCAGGGAAAGTCAGAGTACCAAGAGATC CTGGTTTTTGAGTCAACATCATTTGGGAAAGTGCTTGTTCTTGATGGTATTGTTCAATTGACTGAGAAAGATGAATGTGCATACCAGGAGATGATCACTC ATCTTCCCCTTTGTTCGATTCCATCTCCCAAAACTGTTTTGGTGGTTGGTGGTGGTGATGGTGGAGTTCTTGAGGAACTTTCTCGCCATAGTTCTGTGGA CCTTATTGATATATGTGAAATAGATCAGATGGTTATAGATGTGTCTAAGAAGTTTTTTCCACAATTATCTGTTGGGTTTGAGGATCCTCGTGTCCGACTT CATGTAGGTGATGCTGTAGAGTTTCTCCGGTCAGCTCCTGAAGGGAAGGACGATGCCATTATTGTTGATTCGTTAGACCCTATAGGTCCTGCTCAAGAGC TTGTAGAAAAGCCATTTTTCGAGTCAATAGCTAGAGCATTAAGGCCTGGTGGTGTGCTCTGTAACATGGCAGAAAGTACGTGGCTACATACACATCTTAT TCAGGATATGATCTCTATATGCTGTGAAACATTTAAGGGTTCTGTCCGTTATGCCTGGGCAAGTGTTCCAACATATCCAAGCGGTGTGATCGGCTTTGTC CTATGCTCAACAGAGGGCCCGCCTGTTGATTTCTTGAATCCTGTCAATCCTATCAAGAAGTTAGAAGGAGCTACCAAGCATAAAAAAGAACTCAAGTACT ATAATTCTGAGGTTCACTCAGCTGCCTTTGCATTGCCAAGATTTTTGAAGAGAGAGGTGAGCTTACTCCAAGACCAAGGGAGGTGA
AA sequence Show only first row Show all	>Potri.015G018900.1 pacid=42776243 polypeptide=Potri.015G018900.1.p locus=Potri.015G018900 ID=Potri.015G018900.1.v4.1 annot-version=v4.1 MEGGAGRGLECQKTMDGKVNNGNSSEKAIPSCCLKAKASAPELDAKCHSTVVSGWFSESHSCSGKASKRVYFNNPMWPGEAHTLEVKEIFYQGKSEYQEI LVFESTSFGKVLVLDGIVQLTEKDECAYQEMITHLPLCSIPSPKTVLVVGGGDGGVLEELSRHSSVDLIDICEIDQMVIDVSKKFFPQLSVGFEDPRVRL HVGDAVEFLRSAPEGKDDAIIVDSLDPIGPAQELVEKPFFESIARALRPGGVLCNMAESTWLHTHLIQDMISICCETFKGSVRYAWASVPTYPSGVIGFV LCSTEGPPVDFLNPVNPIKKLEGATKHKKELKYYNSEVHSAAFALPRFLKREVSLLQDQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Potri.015G018900 [exp]	0	1
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G099000 [exp]	3.00	0.8723
AT1G56130			Leucine-rich repeat transmembr...		Potri.006G255100 [exp]	4.47	0.8284
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	6.92	0.8312
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.001G111700 [exp]	7.74	0.8271
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	8.12	0.8539	COMTL3,Pt-GSI.2
AT1G27620			HXXXD-type acyl-transferase fa...		Potri.005G230900 [exp]	9.32	0.8424
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.014G081100 [exp]	9.94	0.8119
AT5G12300			Calcium-dependent lipid-bindin...		Potri.009G070400 [exp]	12.72	0.8144
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197400 [exp]	12.96	0.8099
AT1G16290			unknown protein		Potri.010G172300 [exp]	14.14	0.8182

Compare expression of checked genes

Potri.015G018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.