Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50160 127 / 1e-31 Plant protein of unknown function (DUF247) (.1) AT3G50150 122 / 1e-29 Plant protein of unknown function (DUF247) (.1) AT3G50180 113 / 1e-26 Plant protein of unknown function (DUF247) (.1) AT2G36430 90 / 4e-19 Plant protein of unknown function (DUF247) (.1) AT4G31980 86 / 2e-17 unknown protein AT3G50130 84 / 6e-17 Plant protein of unknown function (DUF247) (.1) AT3G50120 83 / 1e-16 Plant protein of unknown function (DUF247) (.1) AT1G65985 81 / 3e-16 Plant protein of unknown function (DUF247) (.1) AT3G50170 81 / 5e-16 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 81 / 6e-16 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G042800 [exp] 372 / 2e-124 AT3G50120 155 / 2e-41 Plant protein of unknown function (DUF247) (.1) Potri.006G042873 [exp] 367 / 1e-122 AT3G50180 157 / 6e-42 Plant protein of unknown function (DUF247) (.1) Potri.016G039601 [exp] 346 / 5e-114 AT3G50170 153 / 2e-40 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G039600 [exp] 343 / 1e-112 AT3G50170 149 / 4e-39 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) Potri.016G039866 [exp] 319 / 4e-104 AT3G50180 164 / 2e-44 Plant protein of unknown function (DUF247) (.1) Potri.016G040000 [exp] 318 / 4e-103 AT3G50180 147 / 5e-38 Plant protein of unknown function (DUF247) (.1) Potri.016G039500 [exp] 316 / 9e-103 AT3G50150 167 / 3e-46 Plant protein of unknown function (DUF247) (.1) Potri.016G040100 [exp] 278 / 2e-88 AT3G50150 165 / 2e-45 Plant protein of unknown function (DUF247) (.1) Potri.016G039300 [exp] 270 / 4e-85 AT3G50150 154 / 3e-41 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011501 [exp] 117 / 7e-28 AT3G50120 716 / 0.0 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 108 / 3e-25 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10018320 [exp] 104 / 8e-24 AT3G50120 210 / 2e-61 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 91 / 2e-19 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10006802 [exp] 79 / 1e-15 AT3G50120 305 / 2e-98 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 79 / 1e-15 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 76 / 2e-14 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 75 / 4e-14 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10004515 [exp] 67 / 2e-12 AT3G50120 112 / 4e-29 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 69 / 3e-12 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.015G019000.2 pacid=42776255 polypeptide=Potri.015G019000.2.p locus=Potri.015G019000 ID=Potri.015G019000.2.v4.1 annot-version=v4.1 ATGTCTATAGCACTAAACATTGAGGGCTCTTCACATAGTCCTTCACATAGTCCTTCGCATAGTACTGATCATGCGTGGCTGCAGTCCTTGATGACCGAAA GTAGGGCCGGAAATTCCAACCAAGTGAATGAGCTAGAGGTTCCAAGGGTTCCATCAGAGTTTCGTAAAATGAAAGAGAACACGGATTGCTATGAGCCACT GGTTGTCTCCATCGGTCCCTATCACCATGGGAAAAAAGAACTCAAGGAAATGGAGAAGCTCAAGGCTGAAATGGCCGGCCAGTTTGTCAAAGATAGGAGA GTGACTGCTGAAGAAATGTACAGCAAGGTCAAAGAGTTGGTCACCGATGCAAGGAAATGCTATGCAGAGGAGTCAACACGTCAGTTCAACGATGAGAAAT TCACCCAGATGATGTTTCTTGATGGCTATTTCATTCTCCATGTTGTCTCCCACAAGCTTGCGAAACAGAACCTGAGGAAGGAAGAAGTTGCTTCGGTTAG AAGGGACTTGTTCTTACTAGAGAACCAACTCCCCTTTCGAGTTCTTATCCCATTGATGAGGTTATATAAAAGGAAAGGGGATCACATTGCCGTGGAGGAT ACTTCTTCGTCCAAACATAGTTCGAGTCCGGAAAGTGAAGATCAAAATTGGATGAAAATACTTGAAAATTTCTCCAAAGACATTCATGAAATACCCCCTC AAAGAGAGTTGTGCTGGAAAAAAATATCCCTTTTTTTTTCAGAATTGCCGAGAGCATTAAAATTAAGATCGAAATCCCCAATATCCAAGGATACTGCCTT TGGTTTAGATCCTTATGATCATCTTCTCGAATTTTTTTATTTCATGTTCGTATACGGCAAATTAGGACAACATCTACCAGAGAGAAGAAGGTACGGGGAG ATCACAAGCTGGAACCGGTATTATTCTGTCAACGAGCTTAAGAACGTTGGAATTTCTTTTATGCCAAGCAACACCCGTGTCTTCACCGATGTCAAGTTCA AAAATACATTGCTCGGTGGAGCACTCTGCATTCCTCCACTAAGCATAGAGGACTCAACCAAGTCCTTGCTTCTGAACTTGGCAGCCTATGAAACATGCGC TGGTTGGTATTATGGTAGGTGCACTTCGTATGTATGCCTTATGCGTTCACTGATTGATAAACCTGAAGATGTGAAGGAGCTGCGATCAAAGGGAATACTC CGCACCACTATAGGAAGTGACGATCAGATAGCACAAATCTTCAAAGAGATGACAACCAATCTGGCGCCCAACCCTACTGCTTATACGAAGGTCAAACGCT CTGTTGAATCGCATTATAGAAGCAGTGTCAAGAGATGGATCCTTGAAAATAAGGGTCCTTTTTCTAGAGCAGTGGTCAAGTACTCTTTTATTTATGGCAT TGCAGTAAGTGCCATACAAGCTTACTTAGCAGAAACAAAAGAGAAACCAGGTTTCGGCAACTGCAGCTGCTCAAACGCCACCCTATAA
AA sequence Show only first row Show all	>Potri.015G019000.2 pacid=42776255 polypeptide=Potri.015G019000.2.p locus=Potri.015G019000 ID=Potri.015G019000.2.v4.1 annot-version=v4.1 MSIALNIEGSSHSPSHSPSHSTDHAWLQSLMTESRAGNSNQVNELEVPRVPSEFRKMKENTDCYEPLVVSIGPYHHGKKELKEMEKLKAEMAGQFVKDRR VTAEEMYSKVKELVTDARKCYAEESTRQFNDEKFTQMMFLDGYFILHVVSHKLAKQNLRKEEVASVRRDLFLLENQLPFRVLIPLMRLYKRKGDHIAVED TSSSKHSSSPESEDQNWMKILENFSKDIHEIPPQRELCWKKISLFFSELPRALKLRSKSPISKDTAFGLDPYDHLLEFFYFMFVYGKLGQHLPERRRYGE ITSWNRYYSVNELKNVGISFMPSNTRVFTDVKFKNTLLGGALCIPPLSIEDSTKSLLLNLAAYETCAGWYYGRCTSYVCLMRSLIDKPEDVKELRSKGIL RTTIGSDDQIAQIFKEMTTNLAPNPTAYTKVKRSVESHYRSSVKRWILENKGPFSRAVVKYSFIYGIAVSAIQAYLAETKEKPGFGNCSCSNATL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50160			Plant protein of unknown funct...		Potri.015G019000 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Potri.014G050700 [exp]	3.46	0.9632
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061300 [exp]	8.83	0.9541
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	9.16	0.9555	NAC020
AT3G15800			Glycosyl hydrolase superfamily...		Potri.003G032600 [exp]	10.95	0.9533
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	11.53	0.9477
AT3G48660			Protein of unknown function (D...		Potri.003G170400 [exp]	15.42	0.9399
AT3G17380			TRAF-like family protein (.1)		Potri.008G005300 [exp]	15.65	0.9524
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014800 [exp]	15.68	0.8938
AT1G54400			HSP20-like chaperones superfam...		Potri.013G054700 [exp]	16.61	0.9490
AT5G45480			Protein of unknown function (D...		Potri.016G012400 [exp]	17.74	0.9392

Compare expression of checked genes

Potri.015G019000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.