Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CNGC.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53130 1025 / 0 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G01340 785 / 0 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT4G01010 779 / 0 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT2G46430 742 / 0 CNGC3.C, ATCNGC3 cyclic nucleotide gated channel 3 (.1.2) AT2G23980 716 / 0 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT4G30560 713 / 0 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT5G57940 698 / 0 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 679 / 0 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT1G15990 658 / 0 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT2G28260 633 / 0 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002200 [exp] 1219 / 0 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.002G170000 [exp] 845 / 0 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.014G097900 [exp] 835 / 0 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.018G106100 [exp] 709 / 0 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.003G183000 [exp] 679 / 0 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 676 / 0 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.009G010700 [exp] 644 / 0 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.018G097600 [exp] 614 / 0 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 593 / 0 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019014 [exp] 1067 / 0 AT5G53130 1122 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10003395 [exp] 1033 / 0 AT5G53130 1117 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10014925 [exp] 980 / 0 AT5G53130 1031 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10038815 [exp] 914 / 0 AT5G53130 971 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Lus10036260 [exp] 692 / 0 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10022155 [exp] 691 / 0 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10041662 [exp] 676 / 0 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 674 / 0 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10021461 [exp] 649 / 0 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 628 / 0 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.015G019100.4 pacid=42775493 polypeptide=Potri.015G019100.4.p locus=Potri.015G019100 ID=Potri.015G019100.4.v4.1 annot-version=v4.1 ATGAATCAACCACAAGAGAAGTTTGTGAGGTTTCAAGATTGGAAATCAGAGAAAACTACTGAAGGTCGGTATTCTGCAAGTAATGGGATATATCCAGGAA AAATTAGAACAACAATAAGCTCAGTTTCGGAGAAGGTTCAAAGAGGATTGGAATCTGGTTCTGCAAGCTTTAGAAGGATTTCAAAATCATTAAAATCACA TTCATTCAACAGTGAGTTTGCTTCCAAGCAGAAAATTCTTGACCCACAGGGGCCTTTCCTTCAAAGGTGGAACAAGATATTCGTATTATCATGCGTGATT GCTGTTTCACTGGATCCTTTGTTTTTCTATGTCCCTGTGATTGATGATAAGAAGAAATGTCTTTCTTTGGACAACACGATGGAGATTACAGCAAGTGTTT TGCGCTCTTTTACGGACATCTTTTATATACTACATATTATATTTGAATTCCGCACTGGATTCATCGCTCCTTCTTCTCGGGTATTTGGAAGAGGTGTTTT GGTTGAGGATACTTGGGCAATAGCTAAGAGATATCTATCATCATATTTCTTAATTGACATTCTGGCAGTCCTTCCACTCCCACAGGTGGTGATTTTAATT ATCATTCCAAAAATGGGCGGCTCAAGTTATTTGAATACAAAGAACTTGTTAAAATTTGTTGTTATCTTCCAGTATGTTCCAAGGTTTGTGCGAATCTATC CATTATATAAGGAAGTTACAACTTCTGGCATCCTTACCGAAACTGCATGGGCTGGAGCTGCATTTAATCTGTTTCTGTACATGCTTGCGAGTCATATACT TGGAGCCTTTTGGTATTTGTTCTCAATAGAACGAGAAACAAATTGTTGGAGAAAAGCTTGTGGGAAAAATTGTGGATGCAAGCCTGAACTTTTGTTTTGT GATAGAGATGTTGTTGGAGATGTCACATTTCTGGATGGTTATTGCCCGATACAAACACCAAACGAAACAATCTTCAATTTTGGAATATTCCTTGATGCCC TTCAGTCTGGTGTTGTTTTGTCGTCCATGGATTTTCCACAGAAGTTCTTTTACTGTTTTTGGTGGGGCCTGCAAAATCTGAGTTCTCTTGGTCAAAATCT TCAAACAAGTACCTATGTTTGGGAAATCTGCTTTGCAGTTTTCATTTCTATCTCCGGCTTGGTACTATTTTCATTTCTCATCGGAAATATGCAGACATAT TTGCAATCCACAACTACAAGATTGGAGGAAATGAGAATCAAAAGACGAGATGCAGAGCAGTGGATGTCCCATCGCTTGCTTCCAGATAATATAAAGGAGC GGATTAGGCGGTATGAGCAATATAGATGGCAAGAAACTAGAGGTGTTGATGAAGAGACCCTTGTCCATAATCTTCCCAAGGACCTTAGAAGAGACATTAA GCGTCACCTCTGCTTGGCTTTGCTCATGAGAGTGCCGATGTTTGAAAAAATGGATGAACAATTACTAGATGCTATGTGTGACCGTCTTAAGCCAGCATTA TACACAGAGGAGAGCTACATTGTTCGTGAGGGTGACCCGGTTGATGAAATGCTCTTTGTTATGCGGGGCAAGCTATTGACCATGACCACCAATGGTGGAA GAACTGGCTTCTTCAACTCTGAGTACCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTCACATGGGCTTTAGATCCCCACTCCTCATCTAATCTGCC TATCTCAACTAGAACAGTTCGAACCATTACGGAAGTTGAAGCCTTCGCTCTAATGGCCGATGACTTGAAATTTGTTGCTTCTCAATTCCGGCGGCTCCAC AGTAAGCAGCTCCGGCACACTTTCAGGTTTTACTCACAGCAGTGGAGGACATGGGCAGCCTGTTTTATACAGGCTGCATGGCGCCGTTATAGTAAAAAGA AGCTCGAAGAGTCTCTTCGGCAAGAGGAAAACAGACTACAAGATGCATTAGCCAAGGCTAGTGCGAGCTCACCAAGTTTAGGTGCCACAATATATGCCTC CAGATTTGCTGCTAACGCTTTGCGTGCTCTACGGCGTGGTAGCAATCGCAAGTCAAGGGTACCGGATAGAGTTCCACCAATGCTGCTGCAGAAGCCAGCA GAGCCTGATTTTACTGCTGAAGAATGA
AA sequence Show only first row Show all	>Potri.015G019100.4 pacid=42775493 polypeptide=Potri.015G019100.4.p locus=Potri.015G019100 ID=Potri.015G019100.4.v4.1 annot-version=v4.1 MNQPQEKFVRFQDWKSEKTTEGRYSASNGIYPGKIRTTISSVSEKVQRGLESGSASFRRISKSLKSHSFNSEFASKQKILDPQGPFLQRWNKIFVLSCVI AVSLDPLFFYVPVIDDKKKCLSLDNTMEITASVLRSFTDIFYILHIIFEFRTGFIAPSSRVFGRGVLVEDTWAIAKRYLSSYFLIDILAVLPLPQVVILI IIPKMGGSSYLNTKNLLKFVVIFQYVPRFVRIYPLYKEVTTSGILTETAWAGAAFNLFLYMLASHILGAFWYLFSIERETNCWRKACGKNCGCKPELLFC DRDVVGDVTFLDGYCPIQTPNETIFNFGIFLDALQSGVVLSSMDFPQKFFYCFWWGLQNLSSLGQNLQTSTYVWEICFAVFISISGLVLFSFLIGNMQTY LQSTTTRLEEMRIKRRDAEQWMSHRLLPDNIKERIRRYEQYRWQETRGVDEETLVHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPAL YTEESYIVREGDPVDEMLFVMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVRTITEVEAFALMADDLKFVASQFRRLH SKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLRQEENRLQDALAKASASSPSLGATIYASRFAANALRALRRGSNRKSRVPDRVPPMLLQKPA EPDFTAEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G019100 [exp]	0	1	CNGC.1
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	2.23	0.8925
AT5G59830			unknown protein		Potri.009G027800 [exp]	2.44	0.8840
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	3.46	0.8817
AT1G66920			Protein kinase superfamily pro...		Potri.015G018600 [exp]	3.87	0.8790
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Potri.007G059000 [exp]	3.87	0.8542
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379700 [exp]	6.00	0.8754
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.009G094400 [exp]	6.24	0.8833
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	7.74	0.8577	ARR12.2
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.016G036500 [exp]	8.12	0.8661
AT3G54850		ATPUB14	plant U-box 14 (.1)		Potri.008G035700 [exp]	8.48	0.8710

Compare expression of checked genes

Potri.015G019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.