Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53140 492 / 1e-174 Protein phosphatase 2C family protein (.1) AT4G31750 340 / 2e-116 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 336 / 2e-114 Protein phosphatase 2C family protein (.1) AT5G24940 338 / 4e-114 Protein phosphatase 2C family protein (.1) AT1G43900 301 / 2e-100 Protein phosphatase 2C family protein (.1) AT1G34750 208 / 2e-65 Protein phosphatase 2C family protein (.1) AT1G78200 202 / 4e-63 Protein phosphatase 2C family protein (.1.2) AT1G22280 187 / 3e-57 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT4G28400 184 / 4e-56 Protein phosphatase 2C family protein (.1) AT2G20630 183 / 8e-56 PIA1 PP2C induced by AVRRPM1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G002100 [exp] 610 / 0 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 339 / 2e-116 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 335 / 4e-115 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.005G186001 [exp] 320 / 4e-109 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 320 / 1e-108 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 207 / 5e-65 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 204 / 9e-64 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 189 / 5e-58 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 181 / 8e-55 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019012 [exp] 478 / 6e-170 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 448 / 5e-159 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10039341 [exp] 449 / 1e-157 AT5G53140 444 / 1e-154 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 328 / 1e-111 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 321 / 3e-109 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 317 / 4e-108 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 317 / 5e-108 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10042775 [exp] 292 / 4e-95 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 294 / 6e-95 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 198 / 1e-61 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.015G019200.13 pacid=42775488 polypeptide=Potri.015G019200.13.p locus=Potri.015G019200 ID=Potri.015G019200.13.v4.1 annot-version=v4.1 ATGTTATGCAACAGCTGCATAAGGAGTGTGATTGTACAAGCTGGAATTTTTCGCAAAACAAGGTTGCAATTAGACAACATTGGGAGGAGTTTGAATGCAA GCCGCAGCATAAATTATAAGTGGAATAGACAGGTTTTTTTAAGGAGTAGTATAACTATGATGGTTGATTCTGATTCTACTGATACAAGGGGACCTACTGT TGATCTTTTGAAGGAGAAAGAAGATGATGGTGGATTTGTTAGTGGATGGTGGAAAAGTGAAGACGGGGAATTGAGCTGTGGATATTCAAGTTTCAGGGGA AAGAGAGTTACCATGGAGGATTTCTATGATGCCAAAAGCACCACGATTGATGGGCAAAGAGTCTGCATGTTTGGAATATTTGATGGTCATGGTGGTTCTC GTGCTGCTGAGTATTTGAAGGAGCACCTGTTTGAGAATCTACTGAAGCATCCACAATTTATGGCAGACACCAAATTAGCTATAAGCCAATCATATCAGCA GACTGATGTAGACTTTTTGGACTCTGAAAAGGATACCTACCGTGATGATGGTTCTACTGCTTCAACAGCAGTGCTAGTTGGTGATCATCTTTATGTTGCC AATGTTGGAGATTCACGGACTGTGATTTCAAAGGGTGGAAAAGCGATTCCTCTCTCCGAGGATCATAAACCTAACAGAAGTGATGAGCGGAAGAGAATCG AAAGTGCTGGAGGTGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGTGTATTGGCCATGTCCCGTGCTTTTGGTAACCGCATGTTGAAGCAATTTGT TGTTGCAGAACCTGATATCCAGGAGCAGAAAATAGATCAAGAATTTGAATTGCTTGTGCTCGCAAGTGATGGACTATGGGATGTGGTACCAAATGAGGAT GCTGTTTCCATTGCCAGAACAGAAGAAGAACCTGAGACAGCAGCTAGGAAATTAACCGAGGCTGCTCTTACCCGCGGCAGTGCTGATAACATAACATGCA TTGTAGTGAGATTCCACCATGACAAGATCGATCCATCCAATTCCCAGCAGGATTAG
AA sequence Show only first row Show all	>Potri.015G019200.13 pacid=42775488 polypeptide=Potri.015G019200.13.p locus=Potri.015G019200 ID=Potri.015G019200.13.v4.1 annot-version=v4.1 MLCNSCIRSVIVQAGIFRKTRLQLDNIGRSLNASRSINYKWNRQVFLRSSITMMVDSDSTDTRGPTVDLLKEKEDDGGFVSGWWKSEDGELSCGYSSFRG KRVTMEDFYDAKSTTIDGQRVCMFGIFDGHGGSRAAEYLKEHLFENLLKHPQFMADTKLAISQSYQQTDVDFLDSEKDTYRDDGSTASTAVLVGDHLYVA NVGDSRTVISKGGKAIPLSEDHKPNRSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPDIQEQKIDQEFELLVLASDGLWDVVPNED AVSIARTEEEPETAARKLTEAALTRGSADNITCIVVRFHHDKIDPSNSQQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53140			Protein phosphatase 2C family ...		Potri.015G019200 [exp]	0	1
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G109000 [exp]	5.74	0.6967
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.008G156600 [exp]	10.09	0.6769
AT2G44300			Bifunctional inhibitor/lipid-t...		Potri.001G232000 [exp]	11.13	0.6611
AT5G62350			Plant invertase/pectin methyle...		Potri.015G128700 [exp]	15.49	0.6839
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.009G074200 [exp]	20.34	0.6562
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Potri.002G049800 [exp]	21.00	0.5968	HMT1,SMTA.1
AT4G18220			Drug/metabolite transporter su...		Potri.001G352200 [exp]	26.38	0.5881
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	38.98	0.6005
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.014G024300 [exp]	44.74	0.6345
AT1G67360			Rubber elongation factor prote...		Potri.003G173100 [exp]	48.92	0.6084

Compare expression of checked genes

Potri.015G019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.