Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22370 526 / 0 AtHSR3, ATAOX1A, AOX1A hyper-sensitivity-related 3, alternative oxidase 1A (.1) AT3G22360 485 / 2e-173 AOX1B alternative oxidase 1B (.1) AT3G27620 475 / 2e-169 AOX1C alternative oxidase 1C (.1) AT1G32350 421 / 2e-148 AOX1D alternative oxidase 1D (.1) AT5G64210 421 / 1e-147 AOX2 alternative oxidase 2 (.1) AT4G22260 66 / 6e-12 IM1, IM IMMUTANS, Alternative oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001500 [exp] 652 / 0 AT3G22370 518 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.012G001600 [exp] 623 / 0 AT3G22370 475 / 4e-169 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Potri.003G103900 [exp] 437 / 2e-154 AT1G32350 433 / 1e-153 alternative oxidase 1D (.1) Potri.011G021800 [exp] 64 / 3e-11 AT4G22260 457 / 7e-162 IMMUTANS, Alternative oxidase family protein (.1) Potri.004G002600 [exp] 61 / 2e-10 AT4G22260 424 / 6e-149 IMMUTANS, Alternative oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035670 [exp] 479 / 2e-170 AT3G22370 519 / 0.0 hyper-sensitivity-related 3, alternative oxidase 1A (.1) Lus10020523 [exp] 421 / 7e-148 AT5G64210 462 / 4e-164 alternative oxidase 2 (.1) Lus10005372 [exp] 420 / 1e-147 AT5G64210 453 / 2e-160 alternative oxidase 2 (.1) Lus10002872 [exp] 62 / 3e-10 AT4G22260 466 / 1e-163 IMMUTANS, Alternative oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF01786 [poplar] [flax] AOX Alternative oxidase
Representative CDS sequence Show only first row Show all	>Potri.015G019800.3 pacid=42776321 polypeptide=Potri.015G019800.3.p locus=Potri.015G019800 ID=Potri.015G019800.3.v4.1 annot-version=v4.1 ATGATGATGGCAAGCCGTGGCGGAGGCGTCAAGTTGGCGAGTTCCATGATGTTGGTTTCACGTTCTTTCTCAACAGCCATCTCTCGTGGCATAATAGCCA AAGAGGCAGTCACAGCCAAAGCGGTGGGGTTTCATGGGGATGTTGTGCGTAAGAATATTGGTGAATTTTGGGTTCGTGGTTCGGTTTTTGGTGTGAGGCA TGGAAGTACTATGAGTTTCGGCGAGAAGGATCAACAGAAGGTGGAGATGAAGCAAACCCAACCGGTTGCGGAAGGTGGTGATAAAGAGGAGAAGAAGGAG ATTGCTAGTTACTGGGGTGTTCCTCCTAGTAGGGTTACTAAAGAAGATGGGGCTGAATGGAAGTGGAATTGTTTTAGGCCATGGGAGACGTATTCTGCTG ATTTATCAATTGACCTGAAGAAACATCATGTCCCAGCCACCGTTTTGGACAAAATGGCTTTTTGGATTGTCAAGGCTTTGAGATTGCCCACTGATCTGTT CTTTCAGAGGAGGTATGGCTGCCGTGCAATGATGCTAGAAACTGTGGCAGCAGTGCCAGGAATGGTAGGAGGCATGCTGCTACACTGCAAGTCATTGAGG CGATTTGAGCACAGTGGAGGATGGATCAAAACATTACTTGACGAGGCTGAAAACGAGCGTATGCATCTCATGACATTCATGGAGGTGGCAAAGCCCAGGT GGTATGAGCGCGCTCTGGTGATTACTGTCCAAGGTGTTTTCTTGAATGCTTACTTCCTTGGCTACATTATCTCCCCCAAATTCGCTCATCGCATGGTGGG GTACCTCGAGGAAGAAGCTATCCATTCCTACACCGAGTTCCTGAAGGAGTTGGACAAAGGCAACATTGAGAATGTTCCTGCTCCTGCCATTGCTGTTGAT TACTGGCGGTTGCCTCCTAACGCCACCCTCCGCGATGTTGTTCTGGTTGTGAGAGCTGATGAGGCCCATCACCGCGATGTGAATCATTTTGCTTCGGACA TACACTATCAAGGACGTGAACTAAAAGAAGCTCCTGCTCCTATTGGTTATCACTAA
AA sequence Show only first row Show all	>Potri.015G019800.3 pacid=42776321 polypeptide=Potri.015G019800.3.p locus=Potri.015G019800 ID=Potri.015G019800.3.v4.1 annot-version=v4.1 MMMASRGGGVKLASSMMLVSRSFSTAISRGIIAKEAVTAKAVGFHGDVVRKNIGEFWVRGSVFGVRHGSTMSFGEKDQQKVEMKQTQPVAEGGDKEEKKE IASYWGVPPSRVTKEDGAEWKWNCFRPWETYSADLSIDLKKHHVPATVLDKMAFWIVKALRLPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLR RFEHSGGWIKTLLDEAENERMHLMTFMEVAKPRWYERALVITVQGVFLNAYFLGYIISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIAVD YWRLPPNATLRDVVLVVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	0	1
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.006G022000 [exp]	1.73	0.9641
AT5G38210			Protein kinase family protein ...		Potri.017G118250 [exp]	2.82	0.9511
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	2.82	0.9453
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	3.16	0.9412	Pt-ATAF1.1
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.002G061400 [exp]	3.31	0.9409
AT1G34300			lectin protein kinase family p...		Potri.013G115700 [exp]	5.19	0.9287
AT3G25020		AtRLP42	receptor like protein 42 (.1)		Potri.011G055200 [exp]	5.29	0.9271
AT3G60690			SAUR-like auxin-responsive pro...		Potri.002G145300 [exp]	5.91	0.9508	SAUR20
					Potri.005G223450 [exp]	6.00	0.9481
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	6.16	0.9345

Compare expression of checked genes

Potri.015G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.