Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53150 574 / 0 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 430 / 1e-141 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 283 / 3e-82 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 262 / 6e-80 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT5G35753 241 / 2e-70 Domain of unknown function (DUF3444) (.1) AT2G05230 240 / 5e-69 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 240 / 5e-69 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 215 / 6e-62 unknown protein AT4G19570 191 / 1e-52 Chaperone DnaJ-domain superfamily protein (.1) AT5G37440 166 / 4e-46 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001100 [exp] 1182 / 0 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 674 / 0 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 651 / 0 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 616 / 0 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 614 / 0 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 323 / 2e-96 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 287 / 2e-86 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 283 / 7e-85 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 175 / 3e-45 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038816 [exp] 646 / 0 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 634 / 0 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 581 / 0 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 575 / 0 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 279 / 1e-82 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 275 / 2e-81 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 200 / 2e-56 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 198 / 2e-56 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 181 / 3e-49 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 178 / 8e-48 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF11926 [poplar] [flax] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Potri.015G020200.2 pacid=42774985 polypeptide=Potri.015G020200.2.p locus=Potri.015G020200 ID=Potri.015G020200.2.v4.1 annot-version=v4.1 ATGGAGTGCAACAAAGATGAAGCAGTCAGGGCTAAGGAAATTGCTGAGAAGAAGTTTATGGGGAGGGATTATGTTGGGGCGAAGAAATTTGCTTTAAAGG CTCAAAGCTTGTATCCCGAGCTAGAGGGTTTATCCCAAATGTTGATAGCATTTGATGTGTATATTTCTGCAGAGAACAGAATAAGTAGTGGAGAAGTTGA TTGGTACAGCGTGCTTGGTGTGAACCCCTGGGCTGATGATGAGACAGTCAGGAAACAATACCACAAGCTAGCTCTCATACTTCATCCTGATAAAAACCAG TCTCTGGGTGCAGATGGTGCATTTAAGTTGGTTTCAGAGGCCTGGGGTTTGTTATCTAATAAGGAAAAGAGACTAGCATACAATCAGAAACTGAATCCAT CAGGACAGCAGCAGAGAGTACCAACCCGGACTAAGGTTCCCTCTTCCCAGCATAGTGCAAATGGCTTTCATAATCATAACAGTACCACAACTTCGCACAC AAGGACTCAGAACAAGAATTTGCAGTCGAGGCCCACATCAGCCCCTTCTCCTTCATCTCGAAAACCTGATACATTTTGGACTATCTGCCATCGATGCATG ATGCATTATGAGTATCTGAGGGTTTATTTGAATCACAACCTGCGATGCCCCAACTGTCATCAGCCTTTTTTGGCTGTTGAGAAGGATCCACCTTCAAACG TTACGAAGTCATCCCAGAATTCAAGACATCATGCTGCAAATAGTAATCCATTTAATTTCCCAAAAAATGGCGGTCAAAGCTCACGATCTGAGGGATTTGG AGTATGCAATTCAACTACTGCCCCAAACCTCCAAAGGAGTAATTTTACTAGAATGAATGATTCTGGAGGCAAATTTGCATCAACACCAACTGCTGGTCAT GCTGAGAGTGTGGTTCAGAAGGCACATGACCAAGTGAAGAGGGAGCAGGACGCACAGGGAGCCACTGAACGGGAGAAGCGTTATGTTTCTAAAAGGGTGG ATAATTCTTCTCTTAGAGCAGACCAACTCTTTAAAAGGAGGAGATCTGATGAGGCTAGTGTGAACAATTATGGAGCTGACATTTTGAATCAAGCAGCCAC CGGAAATGGAGGAGCGGGATTGGGAAATTCATCTGAACCAAGAAGGGGCTATTTTGAAGCACAAAGGGTTTATGGTTTCTCAGATATTCGTACCAAGTCC ATTACCGAGAGAGAGTTGTCACTTCTCGAGGTTCGAAAAATGTTGATGAAGAAGGGTCTCTTGGATGTGTGCGGAAAACTTAAAGAATGGAGCTCAAATC AAGTGAAACTGAAAGAGAGTAGAACACAGGAAAGCATGGTGAACAATGATGCAAATAAACATAAGAGGAGTGGTCACTCTGCTGGCACTTCTTCCAATGA ATCTACTAAACAGGCAACAGCACCTTTGTCTATCAATGTTCCGGATTCTGATTTTCATAACTTTGACCTGGATCGAACAGAAAGTTCCTTTGGGGATGAC CAGGTGTGGGCTGCCTATGATGAAAATGATGGGATGCCTCGATATTATGCTCGAATTATCTCAGTGATCTCTTTGAAGCCATTTAAAATGAAGATCAGTT GGCTTAACTCAAGAAGCAACAGTGAATTTGGCCCTTTAGACTGGGTGGGGGCTGGTTTCCTAAAAACCTGTGGCGATTTTTGGACTGGCAAACATGAAAT CAGTAAAACTCTAAATGCTTTCTCACACAGGGTTATGTGGACGAAAGGCACACGTGGAGTTGTTCGCATACTTCCAAGAAAGGAAGATGTCTGGGCTCTA TATAGAAACTGGTCTCCAGACTGGAATGATGATACCCCAGATGAAATGGTACAAGAATATGAGATGGTAGAAGTGCTCGACGACTATGATGAAGAGCAGG GTATATCTGTAGTTCCTCTTATTAAAGTTGCTGGTTTCAAGGCAGTTTTTCGTAGACATGTAGGTCCAAATGAAGTTAGGAGGATTCCAAAAGAAGAGAT GTTCCGCTTCTCTCATCAGGTCCCTAATCACGTGCTTACTGGCGAAGAAGCTCATAATGCCCCAGAGGGTTGTCGGGAATTAGACCCAGCTGCTATCCCG ATGGAATTTCTTCAGGTTATTACAGAAGCCAGTGAGGCAGCAGTGGTGGCAACTGGTAGAAAGGCTAAGGAGGAAATGGCGTAG
AA sequence Show only first row Show all	>Potri.015G020200.2 pacid=42774985 polypeptide=Potri.015G020200.2.p locus=Potri.015G020200 ID=Potri.015G020200.2.v4.1 annot-version=v4.1 MECNKDEAVRAKEIAEKKFMGRDYVGAKKFALKAQSLYPELEGLSQMLIAFDVYISAENRISSGEVDWYSVLGVNPWADDETVRKQYHKLALILHPDKNQ SLGADGAFKLVSEAWGLLSNKEKRLAYNQKLNPSGQQQRVPTRTKVPSSQHSANGFHNHNSTTTSHTRTQNKNLQSRPTSAPSPSSRKPDTFWTICHRCM MHYEYLRVYLNHNLRCPNCHQPFLAVEKDPPSNVTKSSQNSRHHAANSNPFNFPKNGGQSSRSEGFGVCNSTTAPNLQRSNFTRMNDSGGKFASTPTAGH AESVVQKAHDQVKREQDAQGATEREKRYVSKRVDNSSLRADQLFKRRRSDEASVNNYGADILNQAATGNGGAGLGNSSEPRRGYFEAQRVYGFSDIRTKS ITERELSLLEVRKMLMKKGLLDVCGKLKEWSSNQVKLKESRTQESMVNNDANKHKRSGHSAGTSSNESTKQATAPLSINVPDSDFHNFDLDRTESSFGDD QVWAAYDENDGMPRYYARIISVISLKPFKMKISWLNSRSNSEFGPLDWVGAGFLKTCGDFWTGKHEISKTLNAFSHRVMWTKGTRGVVRILPRKEDVWAL YRNWSPDWNDDTPDEMVQEYEMVEVLDDYDEEQGISVVPLIKVAGFKAVFRRHVGPNEVRRIPKEEMFRFSHQVPNHVLTGEEAHNAPEGCRELDPAAIP MEFLQVITEASEAAVVATGRKAKEEMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G020200 [exp]	0	1
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	2.82	0.8030
AT4G15890			binding (.1)		Potri.010G013300 [exp]	3.46	0.7631
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.014G109700 [exp]	9.89	0.7558
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145578 [exp]	15.49	0.7577
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	20.34	0.7107	Pt-APP.2
AT3G01600	NAC	ANAC044	NAC domain containing protein ...		Potri.001G343800 [exp]	21.35	0.7082
AT3G23750			Leucine-rich repeat protein ki...		Potri.013G035900 [exp]	22.84	0.7037
AT2G29040			Exostosin family protein (.1)		Potri.009G032500 [exp]	23.66	0.7554
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.009G106200 [exp]	33.67	0.7421	SQN.1
AT4G32340			Tetratricopeptide repeat (TPR)...		Potri.006G254300 [exp]	36.49	0.7537

Compare expression of checked genes

Potri.015G020200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.