Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78090 333 / 8e-113 ATTPPB Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) AT1G35910 330 / 1e-111 TPPD trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G22190 325 / 4e-110 TPPE trehalose-6-phosphate phosphatase E, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39770 325 / 5e-110 TPPH trehalose-6-phosphate phosphatase H, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G51460 322 / 1e-108 ATTPPA Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) AT4G22590 319 / 3e-107 TPPG trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G22210 317 / 3e-107 TPPC trehalose-6-phosphate phosphatase C, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G10100 317 / 9e-107 TPPI trehalose-6-phosphate phosphatase I, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G65140 315 / 1e-105 TPPJ trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT4G12430 307 / 8e-103 TPPF trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001000 [exp] 629 / 0 AT1G35910 336 / 4e-114 trehalose-6-phosphate phosphatase D, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G090900 [exp] 347 / 3e-118 AT5G65140 548 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.005G077200 [exp] 345 / 1e-117 AT5G65140 545 / 0.0 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G094500 [exp] 343 / 5e-117 AT5G65140 489 / 3e-174 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.012G126100 [exp] 338 / 2e-114 AT5G51460 526 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.015G126900 [exp] 332 / 2e-112 AT5G51460 531 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Potri.001G120500 [exp] 332 / 3e-112 AT4G22590 501 / 2e-178 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G112400 [exp] 321 / 7e-108 AT4G12430 485 / 3e-172 trehalose-6-phosphate phosphatase F, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G166700 [exp] 250 / 2e-81 AT5G65140 362 / 8e-126 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019010 [exp] 440 / 3e-155 AT1G78090 338 / 6e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10039339 [exp] 421 / 1e-147 AT1G78090 339 / 2e-115 Arabidopsis thaliana trehalose-6-phosphate phosphatase B, trehalose-6-phosphate phosphatase (.1) Lus10019666 [exp] 334 / 8e-114 AT5G65140 483 / 9e-173 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10027208 [exp] 326 / 6e-110 AT5G51460 515 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10032244 [exp] 325 / 3e-109 AT4G22590 531 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10024607 [exp] 324 / 6e-109 AT4G22590 534 / 0.0 trehalose-6-phosphate phosphatase G, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10031723 [exp] 313 / 3e-105 AT5G51460 511 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10038921 [exp] 316 / 5e-105 AT5G51460 488 / 2e-172 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10031146 [exp] 310 / 1e-103 AT5G51460 517 / 0.0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3) Lus10000687 [exp] 271 / 1e-88 AT5G65140 451 / 3e-159 trehalose-6-phosphate phosphatase J, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.015G020300.2 pacid=42775898 polypeptide=Potri.015G020300.2.p locus=Potri.015G020300 ID=Potri.015G020300.2.v4.1 annot-version=v4.1 ATGTTTAAGAGAAATCTCGCGAAGTTCAACCAGGCCATGGGATTTCAGAGATCTTCCTATTGGCAAAAGGTGCAGCCTGGTAGTGATCTTTCTACAAAAG AGACGGCACCAAATTCAAGTCACCCTGTAACCAATGAAGCTGTTTCTGATGATGCAGATTACAGTTCATGGATGGTGGACCATCCTTCTGCATTAACCTC ATTTGATCAGATGATGAAGGATGCAAAGGGGAAGAAGATCGTCGTGTTTTTAGACTATGACGGTACTCTCTCGCCGATTGTAAATGATCCTGACCGCGCT TTCATGTCTGATGAGATGCGTGCAGCAGTTCGAGAAGTTGCAAAATACTTTCCAACAGCTATAATCAGTGGTAGAAGCAGAGATAAGGTGAAAGGATTTG TACAGTTGAATAATATATATTATGCTGGAAGCCATGGGATGGACATCATGGCACCACCTAGGCCGGCTAGGTCCAGTGATGGAAAATACCATACTGTTTC CCTTGACAGAAAGGGCAATGATGCTGTCTTTCAACCTGCTCAGAAATTTTTGCCTGCAATTCAAAAGATTTTGAAAGAACTGGAAGAGGCAATTATGAAA ATACCAGGTGCCAGAGTAGAGAACAACAGATTTTGTGCCTCCGTACATTTTCGACAAGTTAGAGAGGAGGATTATGGGACCTTAGAGGAGAAGGTGAAGT CCATACTTAAACACTATCCAGACTTTCGCTTGGGTTGGGGTAAAAAGGTTATGGAAATACGACCATCAATAGAATGGGACAAAGGCAATGCCCTGGAATA TTTACTCGATACTCTAGGGTTAGGTAACTGCACCGATGTTCTCCCACTTTACATTGGAGATGACATAACAGATGAAGATGCTTTCAAGGTAATTCAAAAG AGAGGCCAAGGGTGTCCGATCGTTGTCACTTCCAGTCCCAAGGATACTAAAGCCTCATACTCCCTGTATGAACCATCAGAAGTGTTGACATTCTTGTTGC GTCTAGCAAGGTGGAGGAAATCCTCTAGTTCGAGTAGGTCAGTACTATCTCAGGTTTGGGGTGTGAGTGGTTGA
AA sequence Show only first row Show all	>Potri.015G020300.2 pacid=42775898 polypeptide=Potri.015G020300.2.p locus=Potri.015G020300 ID=Potri.015G020300.2.v4.1 annot-version=v4.1 MFKRNLAKFNQAMGFQRSSYWQKVQPGSDLSTKETAPNSSHPVTNEAVSDDADYSSWMVDHPSALTSFDQMMKDAKGKKIVVFLDYDGTLSPIVNDPDRA FMSDEMRAAVREVAKYFPTAIISGRSRDKVKGFVQLNNIYYAGSHGMDIMAPPRPARSSDGKYHTVSLDRKGNDAVFQPAQKFLPAIQKILKELEEAIMK IPGARVENNRFCASVHFRQVREEDYGTLEEKVKSILKHYPDFRLGWGKKVMEIRPSIEWDKGNALEYLLDTLGLGNCTDVLPLYIGDDITDEDAFKVIQK RGQGCPIVVTSSPKDTKASYSLYEPSEVLTFLLRLARWRKSSSSSRSVLSQVWGVSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Potri.015G020300 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.012G052200 [exp]	5.83	0.9329
AT1G06225		CLE3	CLAVATA3/ESR-RELATED 3 (.1)		Potri.004G053700 [exp]	11.61	0.8689
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Potri.018G128800 [exp]	14.14	0.9178
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G020367 [exp]	15.29	0.9168
AT3G51750			unknown protein		Potri.006G103600 [exp]	15.65	0.6295
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.003G202200 [exp]	19.44	0.9120
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Potri.015G101700 [exp]	20.00	0.9107
AT5G02070			Protein kinase family protein ...		Potri.013G011700 [exp]	21.49	0.9093
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Potri.001G060900 [exp]	21.90	0.9077
					Potri.014G178900 [exp]	25.98	0.9060

Compare expression of checked genes

Potri.015G020300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.