Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61690 1027 / 0 nucleotidyltransferases (.1) AT3G51620 411 / 5e-126 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 362 / 1e-110 PAP/OAS1 substrate-binding domain superfamily (.1) AT2G40520 323 / 1e-97 Nucleotidyltransferase family protein (.1.2.3.4) AT5G53770 48 / 5e-05 Nucleotidyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G000900 [exp] 2092 / 0 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.002G169732 [exp] 1223 / 0 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 1218 / 0 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.013G154900 [exp] 410 / 6e-126 AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G128800 [exp] 405 / 5e-124 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.019G056800 [exp] 372 / 2e-113 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.011G116501 [exp] 85 / 6e-19 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030265 [exp] 938 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 936 / 0 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10030266 [exp] 612 / 0 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 537 / 1e-172 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10022746 [exp] 433 / 2e-135 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 432 / 5e-134 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 430 / 6e-133 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10042221 [exp] 357 / 8e-108 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 337 / 3e-101 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1) Lus10030537 [exp] 328 / 5e-98 AT3G56320 445 / 3e-149 PAP/OAS1 substrate-binding domain superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G020400.1 pacid=42775470 polypeptide=Potri.015G020400.1.p locus=Potri.015G020400 ID=Potri.015G020400.1.v4.1 annot-version=v4.1 ATGGGTGGTCTAGAGGGCTGGGTTCAGCCCAGTGGCTTTTCCCCTAATGGTCTCTTGCCTAATGAAGTTGCCTCTGTAACTCAAGCACTTGAGCCAGAGA GATGGGCAACTGCTGAAGAGAGAACTGCAGAGCTAATTGCTTGTATTCAGCCCAATCAACCATCCGAGGAGCGCCGAAATGCTGTTTTATGCTATGTTCA GCGCCTTATAATGAACTGCTTCCCCTGTCAGGTGTTCACCTTTGGGTCTGTGCCCCTCAAGACCTATCTACCTGATGGAGATATTGATTTAACAGTGTTT ACTGAGAACCAGAATTTGAAGGAAACATGGGCCAATGAGGTACGGGATATCTTAGAGCACGAGGAGAAGAATGAGAACGCTGAATTCCATGTGAAAGAGG TTCAGTATATCCAGGCAGAGGTGAAGATCATAAAGTGTCTTGTGGAAAATATTGTAGTAGACATATCCTTTGACCAGCTTGGTGGTTTGTGTACCCTTTG CTTCCTTGAGGAGGTTGATCAATTGATAGACCAAAACCATCTATTCAAGCGCAGCATTATATTGATTAAAGCTTGGTGTTACTATGAGAGCCGCATCTTG GGTGCTCACCATGGCCTTATTTCAACTTACGCTCTGGAGACATTGGTTTTGTACATATTCCACGTGTTCAATAATAAATTTGCTGGGCCACTTGAGGTGC TCTACCGCTTTCTGGAATTTTTCAGTAAATTTGACTGGGAGAACTATTGCATTAGCCTCTGGGGCCCAGTTCCAATTAGTTCACTTCCTGATATGACTGC GCTCTCTCCACGGAAGGATGGTGGCCAGATACTTCTCAGCAAATTGTTTCTAGATGTCTGCAGCTCTGTGTATGCTGTCTTTCCTAGCCGGCAGGAAAAT CAGGAGCAATCCTTTGTTTCCAAATATTTTAATGTCATCGATCCTTTGCGTGCAAATAACAATCTTGGCCGTAGTGTCAATAAGGGTAACTTCTTTAGGA TTCGCAGTGCTTTTGCTTTTGGAGCTCAACGTCTGGCCAGATTGCTTGACTGTCCAAAAGAGAATCTGCTTGCTGAATTCAACCAGTTTTTCTTGAACAC ATGGGACAGGCATGGAAAAGGTCATCGCCCTGATGCTCCAAGTTCCAATCACGTTGTTCAGCGACCAATCAGGTCTAATGTAATTGATGGGTCTGAGACC ATCATAAATTATTCAAGCAGCAAAAAGACAAAAGAGGATCCTTCTGGCCATCAATCTAAGGTCGGGGTGACTTATGCTGCTCATGCATCTGACAGTGTTT CCTCCCAGCATGATAACCGCAGTTTAAAACGAACATCCAGGCCTGGTAATATATCAGCTATTTCTGGCACTCGAGGCCAGAGCATGCAAGCCAACTTGAC TAACTCCATGGCCTCTGATCAGAATAATAAAAAATTAATATATAATAGTTTGAATGAGAATGCACATAATGAAAAGATGACAAGTTCCGGAACATATTAC TTGGGGAATGAAGTGAATGCTAGGTATCAATTTGCAAGGACTCAATCCAGTCCGGAACTAACAGATACATCCAGTGAAGTCTTATCTCGAGGGAGGCATA ACAGGGCATCAGAGACAGTAAATGGGCAGACTGCTCCTGCAAGGTCACACAATAGCAGGAGAAGAAATTTGGTCCCTGAGGTTTTGGAGAACCATGGTGC AAGATTTTCAACTGAAGACTCACTATCTTCAAGGCATAGCCTATCCCATCAGAGCATTGATGCTGCTGTTGATTCTACTAGTGCTTCAAATAGCTATTTT GGTGATTCTGGCGAAGGAACCATGGAAGACCACCTTTCTCTCTCAGAGACAACGCAATTGCATCAGGAAGAGCAAGACCGTGTTAGCGTGGCATCTTTCA GTGGTTATAGTGTCAGTGAACAGGGTCAGATGCCCATGAATTTAGCTTCTGGTCAACCACCTTTTGCTTTACCACCTTCTGTATTAGCTTCCCTTGGATA TGCTCAAAAACATATGACTGGTACAGCTCCCATAAATGCTCCTTCATTTGAGTCCCCTTGGGTGTCGAACGTGCACTATCCTCAAGGTTTTATTCCAAAT CCAGTATCCCAATATTTTCCAAGCATGGGAATGACCTCAGATCAAGAAGTAACAATTGAAATGATTGATGCTAAATTGGCATCTACAGAGTTGAGTCAAG AAGAGAGTGATCATGGTTGGTCAAAGCCAGATGCAGATTCTGTAAGACATCAACAGAAGAACAGAAGCTCCCAATCTCGACTGCAGGAGCATAGGCAACC TCTTGCTTCTGTTGAGTCTAACCATGTCCATTCATCTCGTGTAAGCAGGTCCGGCAGTTTCTCTCCAAGGGATCGCGGGTTAATTACAGAAGACAGAGGT CTGATTAGGGAAAATTACAGTGACGATGCTCAATATCAAATACCTAAAGAGTCTGATGCTTATTCCTCAGCTGATTTAAGATTTGTACCTTCTTCAGAAG CATCGTCCTCAGGAAGCAAATCTGAAGATAATGGTGATGGATTACTTTTGAGGACTTATAAGTCAACAAAGGATCGGCGGGGAAAGAAATCTGTTCCTTC TACAGATTCTTCTATTGCATATGGGATGGATAAGAATGAAAGGCAACGTGAAGACAAATCAGTTGATCACATATCTCTTCAGCCAGATGAGGACAACAGA GAGTGGATTTCACTTTCAACCATGGGCACTGAACTGTCAGAAAGCATGGTTTCTGGTGTTGGTGCTTCACATGTTTGGAATCATCAAATACAAAGTTATG ATCCGGCATCAGTGAACAGATCAAATTCAATGCTTTCAGTTGCTCCAATGTTTGTGGGTCCCAATTCTCATCAGAGACCTAATGATAACCATGGAGCACT ACCCTTTGCATTTTATCCCACAGGACCACCGGTGCCTTTTCTAGCCATGGTTCCAGTATACAATGTTCCAACCGAAGCAGCAACATCTAGTGTATCCACC AGAAAACTCGATATGGATGAAGAATTTGATAGCTCACAAAACAATCACTCGAACCAAAGTTTGGATTCATCTGAGAATGTTGATTGGTCAGAGATTTTAA ATACTTATACATCTGTGAATAATGCTTCTTCCTCGGTGCATTCTGAACAGGGCAGATCTGAAATTTTGAATAGTGATTTTGCTAGCCACTGGCAGAATCT ACAATATGGGCGGTTTTGCCAGAATGCTCGAAATAATGATTCCTTACCTCATCCATCTCCTGTTGTAGCACCGCCAATGTACTTGCAGGGACATTTTCCA TGGGATGGTCCTGGAAGACCTCCTGCAGACATGAATCTCTTAACTCAACATATGAATGGTCCTCATCTTATTCCCGTTGCTCCTGTCCATCCAGGATCTA TCAGGCAGCCTGGCTTTTATCAACATTATGCTGATAATATTCCTAGATACCGTGCTGGAACTGGAACTTACCTGCCCAATCCGAAAATATCTTACAGGGA TCGACAATTTTCCAATTCCAGAAACCATAGGGGAAATAACAACTATGACAGGAAGGACCACCATGATGACAGGGAAGGAAACTGGAATAACAACTCAAGA CCACGATTTGGTGGTCGCAGCCAAAACCAGAATCAAGTTGAGAAGCCATCCTTTAGGATGGATAGGAGTACACCAAATAATCGTCGTTCTGATAGGTCAT GGAACTCAAAGCAAGATCCTCTTCCACCACACCATCCCCGGAATGGTTCATTTAGTTTCTCAAACTCCACAAACCGAGGTTCTACCAATGCGGCATATGG CATGTATCCGCCAATACCAGTTGTGAATCATAGTGAAGGTTCTGCATCAGTAGTTATGCTTTATCCATATGACCGAAACATGGGCTACAGTTCTGCTGGT GAGCATGTAGAATTTGGGTCCCTTGGGCCAGCTCATTTAACCGGTGACAAGGCATCACCTCATCTTGGTGAAGAGTCATCAAGAGGCATTAATGAGCAAC AAGATTTTCAAAGAGTTTCTGATCTTTCTTCTCCAGATCAGCCAGCATCACCCCTGGTTCGCAGGAGGGTTTAA
AA sequence Show only first row Show all	>Potri.015G020400.1 pacid=42775470 polypeptide=Potri.015G020400.1.p locus=Potri.015G020400 ID=Potri.015G020400.1.v4.1 annot-version=v4.1 MGGLEGWVQPSGFSPNGLLPNEVASVTQALEPERWATAEERTAELIACIQPNQPSEERRNAVLCYVQRLIMNCFPCQVFTFGSVPLKTYLPDGDIDLTVF TENQNLKETWANEVRDILEHEEKNENAEFHVKEVQYIQAEVKIIKCLVENIVVDISFDQLGGLCTLCFLEEVDQLIDQNHLFKRSIILIKAWCYYESRIL GAHHGLISTYALETLVLYIFHVFNNKFAGPLEVLYRFLEFFSKFDWENYCISLWGPVPISSLPDMTALSPRKDGGQILLSKLFLDVCSSVYAVFPSRQEN QEQSFVSKYFNVIDPLRANNNLGRSVNKGNFFRIRSAFAFGAQRLARLLDCPKENLLAEFNQFFLNTWDRHGKGHRPDAPSSNHVVQRPIRSNVIDGSET IINYSSSKKTKEDPSGHQSKVGVTYAAHASDSVSSQHDNRSLKRTSRPGNISAISGTRGQSMQANLTNSMASDQNNKKLIYNSLNENAHNEKMTSSGTYY LGNEVNARYQFARTQSSPELTDTSSEVLSRGRHNRASETVNGQTAPARSHNSRRRNLVPEVLENHGARFSTEDSLSSRHSLSHQSIDAAVDSTSASNSYF GDSGEGTMEDHLSLSETTQLHQEEQDRVSVASFSGYSVSEQGQMPMNLASGQPPFALPPSVLASLGYAQKHMTGTAPINAPSFESPWVSNVHYPQGFIPN PVSQYFPSMGMTSDQEVTIEMIDAKLASTELSQEESDHGWSKPDADSVRHQQKNRSSQSRLQEHRQPLASVESNHVHSSRVSRSGSFSPRDRGLITEDRG LIRENYSDDAQYQIPKESDAYSSADLRFVPSSEASSSGSKSEDNGDGLLLRTYKSTKDRRGKKSVPSTDSSIAYGMDKNERQREDKSVDHISLQPDEDNR EWISLSTMGTELSESMVSGVGASHVWNHQIQSYDPASVNRSNSMLSVAPMFVGPNSHQRPNDNHGALPFAFYPTGPPVPFLAMVPVYNVPTEAATSSVST RKLDMDEEFDSSQNNHSNQSLDSSENVDWSEILNTYTSVNNASSSVHSEQGRSEILNSDFASHWQNLQYGRFCQNARNNDSLPHPSPVVAPPMYLQGHFP WDGPGRPPADMNLLTQHMNGPHLIPVAPVHPGSIRQPGFYQHYADNIPRYRAGTGTYLPNPKISYRDRQFSNSRNHRGNNNYDRKDHHDDREGNWNNNSR PRFGGRSQNQNQVEKPSFRMDRSTPNNRRSDRSWNSKQDPLPPHHPRNGSFSFSNSTNRGSTNAAYGMYPPIPVVNHSEGSASVVMLYPYDRNMGYSSAG EHVEFGSLGPAHLTGDKASPHLGEESSRGINEQQDFQRVSDLSSPDQPASPLVRRRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61690			nucleotidyltransferases (.1)		Potri.015G020400 [exp]	0	1
AT5G43310			COP1-interacting protein-relat...		Potri.008G168300 [exp]	4.89	0.7788
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.009G144800 [exp]	5.38	0.8416
AT5G01400		ESP4	ENHANCED SILENCING PHENOTYPE 4...		Potri.016G116600 [exp]	7.34	0.8399
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	8.30	0.8275
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.003G000500 [exp]	9.48	0.7592	CAND1.2
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.003G129000 [exp]	9.79	0.7550	YDA.1
AT5G15270			RNA-binding KH domain-containi...		Potri.010G167100 [exp]	14.07	0.7713
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	15.09	0.7904	APC1.1
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	15.58	0.7834
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	16.12	0.7884

Compare expression of checked genes

Potri.015G020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.