Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23780 85 / 5e-18 F-box family protein (.1) AT1G70360 78 / 6e-17 F-box family protein (.1) AT1G23770 79 / 2e-16 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G109700 [exp] 186 / 3e-54 AT1G23780 244 / 2e-74 F-box family protein (.1) Potri.017G134500 [exp] 0 / 1 AT1G23780 0 / 1 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012441 [exp] 115 / 2e-28 AT1G23780 215 / 3e-63 F-box family protein (.1) Lus10033762 [exp] 110 / 2e-26 AT1G23780 199 / 4e-57 F-box family protein (.1) Lus10011411 [exp] 100 / 5e-24 AT1G23770 110 / 5e-28 F-box family protein (.1) Lus10006139 [exp] 69 / 3e-14 AT1G23780 62 / 3e-12 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G020600.2 pacid=42775609 polypeptide=Potri.015G020600.2.p locus=Potri.015G020600 ID=Potri.015G020600.2.v4.1 annot-version=v4.1 ATGAGCTCAATGCATCTTCGCCAGAGGATTCTTTGCAATCTCTTGGTATTACGTCTGGTGACCTCGCTTATTTCTCTGTCAACACCATTGCTGTGTTTAG GTTCTTGTTCCTCTGTAAGAGAACAGGCTCGAGGTCATCGAGGTAATGTACAAGAGCCTACGCCTGATCAATTGATGAGTTTTCCAGAGTCAGTTTTTGG TTTTAATAAGCTCGGAAACCAAGATTTGTTTGTACGTGGGCATGCTGGTGTTCAAGCCAACGATGCCAATTCTCAAGAAACTAAATCTGAAATTTCTCTG GATATGCTTGTGCAAGGACAGAAGGGTGAGCAGCATGAGATTGGAGGATCCGATACGAGTGATGCAGTTATTGAAAGACATGGATCTCTAGATTCAAAAG CTCGGAGTGGAGAAACCTTAGAGACACAAGAATTGACCAGTGTAGATTTTGTGTGGGCAGATGGTAAGAATGATGGGATGAATGAAAATGATAGGTCATC CATGTTGTATCTTGAAAATGAAAATTTTGAGTTGTGGAAAATCGTGAAGGATGGCCTTGTTTTGCCTTTATTGATAGATATTTGTAAGAAGGTTGGTCTG TTTCTTCCACCATGCTTGATGCGCCTCCCAACAGAGCTGAAGCTCAAGATTTTAGAGTCACTAGCTGCCATTGATATTGCAAAAATGGAAAGTGTTTCTT CAGAGATGCAATGCTTGTCTTCAAACAATGATCCATGGCAGCAGAAATTTGTGGAGGAGTTTGGAGATGGACAGGAGCGCTGGGAACTGTCAATTGGAAA GAGCAGTTTGCTTCATATTGGGAGAATAAGAAGAAGCGGAAGAGGGATGTCAATGCCATGGCAAGATTATCATCAAGTTCCGCCCTTTTTCTTCCCAACC AGGAGAAATTTTGCTTGGTATTCCTCCACCCAATGGTCGTCCTGGTCAAGGATTTCCTCGATTTCGTTGAAATTTTGCTCGAAGTTGTAA
AA sequence Show only first row Show all	>Potri.015G020600.2 pacid=42775609 polypeptide=Potri.015G020600.2.p locus=Potri.015G020600 ID=Potri.015G020600.2.v4.1 annot-version=v4.1 MSSMHLRQRILCNLLVLRLVTSLISLSTPLLCLGSCSSVREQARGHRGNVQEPTPDQLMSFPESVFGFNKLGNQDLFVRGHAGVQANDANSQETKSEISL DMLVQGQKGEQHEIGGSDTSDAVIERHGSLDSKARSGETLETQELTSVDFVWADGKNDGMNENDRSSMLYLENENFELWKIVKDGLVLPLLIDICKKVGL FLPPCLMRLPTELKLKILESLAAIDIAKMESVSSEMQCLSSNNDPWQQKFVEEFGDGQERWELSIGKSSLLHIGRIRRSGRGMSMPWQDYHQVPPFFFPT RRNFAWYSSTQWSSWSRISSISLKFCSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23780			F-box family protein (.1)		Potri.015G020600 [exp]	0	1
AT3G47670			Plant invertase/pectin methyle...		Potri.001G108200 [exp]	7.74	0.6311
AT2G46540			unknown protein		Potri.014G100250 [exp]	9.16	0.6419
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Potri.001G286100 [exp]	28.77	0.6474
AT3G12050			Aha1 domain-containing protein...		Potri.006G194400 [exp]	56.92	0.5920
AT4G32050			neurochondrin family protein (...		Potri.018G022800 [exp]	77.38	0.5766
AT2G10950			BSD domain-containing protein ...		Potri.018G125400 [exp]	77.42	0.5662
AT5G46170			F-box family protein (.1)		Potri.004G065900 [exp]	131.80	0.5220
AT3G05320			O-fucosyltransferase family pr...		Potri.015G117500 [exp]	133.35	0.5025
AT3G11230			Yippee family putative zinc-bi...		Potri.016G115000 [exp]	159.19	0.5269
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	159.83	0.5670

Compare expression of checked genes

Potri.015G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.