Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53180 584 / 0 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2) AT3G01150 503 / 7e-178 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2) AT1G43190 139 / 2e-36 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G029300 [exp] 760 / 0 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Potri.004G123300 [exp] 540 / 0 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.017G085400 [exp] 535 / 0 AT3G01150 607 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Potri.002G066000 [exp] 135 / 5e-35 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Potri.005G194700 [exp] 132 / 5e-34 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014931 [exp] 658 / 0 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10038820 [exp] 596 / 0 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2) Lus10005233 [exp] 507 / 7e-179 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10030688 [exp] 473 / 1e-165 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2) Lus10028566 [exp] 99 / 3e-22 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10018871 [exp] 92 / 4e-20 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3) Lus10026413 [exp] 45 / 4e-05 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10042240 [exp] 42 / 0.0004 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.015G020800.1 pacid=42776548 polypeptide=Potri.015G020800.1.p locus=Potri.015G020800 ID=Potri.015G020800.1.v4.1 annot-version=v4.1 ATGTCATCTGTATCGAGTCAGTCGCAATTCCGTCTTACCCAACCGCCATCTAAGGTGTTGCATTTGAGAAACTTGCCATGGGAGTGCACTGAAGAGGAAT TGGTTGAGCTTGGGAAGCCGTTTGGTAATGTTGTTAATACCAAGTGTAATGTTGGACCGAATAGAAATCAAGCTTTCATTGAATTTGCGGATCTGAATCA AGCTATTGCGATGATATCGTATTATGCATCATCCTCGGAGCCTGCTCAAGTTCGAGGGAAGACAGTTTACTTGCAGTATTCTAATAGGCAAGAAATAGTG AACAACAAAACGACAGCTGATGCTGGTGGAAATGTGTTGTTGATTACCATTGAAGGGGCAGATGCACGCCTGGTCAGCATTGATGTCTTGCACCTGGTAT TTTCTGCCTTTGGGTTTGTTCATAAGATTACTACCTTTGAGAAGATGGATAGATTCCAGGCTTTGGTGCAATTCTCCGATGTGGAAACTGCCTCTTCTGC GAAAAATGCCCTGGATGGAAGAAACATCCCTAGTTATCTGCTTCCTGAACATCTTGGGCCCTGTACTCTTAGGATCGCATATTCTGGTCATACAGATTTG AGTGTAAAATTTCAGAGCCATCGGAGTAGGGACTACACTAATCCAAACCTTCCTGTTGCACAATCAGCTATAGATGCAAATGGAATGTTCAGCATGGGCC TTGATGGGAAAAAACTAGAACCTGAGAGCAATGTTCTTCTTGCATCAATCGAGAACATGCAGTATGCTGTCACATTGGATGTTTTACACATGGTCTTTTC TTCTTTTGGTCCTGTCCAGAAGATTGCCATGTTTGATAAAAACAGTGGACTTCAGGCTTTAATTCAATACCCTGATGTCCAGACAGCTGTTGTTGCCAAG GAAGCATTGGAAGGACACTGCATCTATGATGGAGGATTTTGCAAGCTTCACCTTTCATACTCACGCCATAATGATCTTAGTATTAAGGTCAATAATGATA GGAGCAGAGACTACACGATTCCCAACAATGTAATGGTGAACCCCCAGCCTTCAATTCTAGGGCAGCAGCCAGTTGCAACACATGGTCCTCCTTCTCATCT ATACACTGGAGCTCAGTTTGCTCCAACTACAGAGCATTCAATGATTCCTCAGCCTTCTTCTGGATGGGCCACTGGCTTTCCACCAGTACCCAATTCCATG CCTGGCCAGATGAATAATAATCCTTACTTGCCACCTGGAACTATGCCACCTCAAATGGGCCATGGAATGATGCAGATGCCTAGCCATGGTGGCCCACCAC ATACTCATGCAATGCCCCCTTACAGACCTTATCATATGCAATAG
AA sequence Show only first row Show all	>Potri.015G020800.1 pacid=42776548 polypeptide=Potri.015G020800.1.p locus=Potri.015G020800 ID=Potri.015G020800.1.v4.1 annot-version=v4.1 MSSVSSQSQFRLTQPPSKVLHLRNLPWECTEEELVELGKPFGNVVNTKCNVGPNRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIV NNKTTADAGGNVLLITIEGADARLVSIDVLHLVFSAFGFVHKITTFEKMDRFQALVQFSDVETASSAKNALDGRNIPSYLLPEHLGPCTLRIAYSGHTDL SVKFQSHRSRDYTNPNLPVAQSAIDANGMFSMGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSSFGPVQKIAMFDKNSGLQALIQYPDVQTAVVAK EALEGHCIYDGGFCKLHLSYSRHNDLSIKVNNDRSRDYTIPNNVMVNPQPSILGQQPVATHGPPSHLYTGAQFAPTTEHSMIPQPSSGWATGFPPVPNSM PGQMNNNPYLPPGTMPPQMGHGMMQMPSHGGPPHTHAMPPYRPYHMQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.015G020800 [exp]	0	1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.005G242700 [exp]	4.24	0.8091
AT5G05450			P-loop containing nucleoside t...		Potri.010G184132 [exp]	4.89	0.7754
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.001G150600 [exp]	8.66	0.7527
AT1G11060			WAPL (Wings apart-like protein...		Potri.004G039900 [exp]	10.00	0.7235
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	11.40	0.7106	CEF.1
AT1G34270			Exostosin family protein (.1)		Potri.013G116200 [exp]	13.41	0.7392
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	19.59	0.7818
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Potri.014G074700 [exp]	22.24	0.7390
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	22.97	0.7384
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.008G078200 [exp]	26.26	0.6435

Compare expression of checked genes

Potri.015G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.