Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24130 310 / 8e-106 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G021400 [exp] 477 / 1e-171 AT5G24130 308 / 6e-105 unknown protein Potri.012G031000 [exp] 415 / 4e-147 AT5G24130 306 / 4e-104 unknown protein Potri.015G021300 [exp] 310 / 4e-107 AT5G24130 205 / 6e-66 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001061 [exp] 332 / 4e-114 AT5G24130 326 / 2e-111 unknown protein Lus10039333 [exp] 217 / 7e-71 AT5G24130 193 / 1e-61 unknown protein Lus10039332 [exp] 104 / 6e-28 AT5G24130 108 / 5e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G021100.1 pacid=42776461 polypeptide=Potri.015G021100.1.p locus=Potri.015G021100 ID=Potri.015G021100.1.v4.1 annot-version=v4.1 ATGGTGAAACTAGCATCAGCTAGAGAGAGTAGAATGTACGGGCCAAGGCTAGCTAGAAATAGAGGAGAATATATGAACGCAGGGCTCTGTGTGTTTGCAG CTATTGTGCTTGTTGGTGGGTTTGTGGCTGAATTGTCAAAGGAACCCAAGTCAGGTCTTGTGCTTTTGCTTATAGCTCTCCTACTTATCATGGTGGTTAA TCTTCATGATCTTGTTGCACATCTAGCCGGGATTGATTATCGGTTTCCTTTAATGGGGTTTGATACACAGCTTGCACTTGTTGAGTTTGCGGTTCCTGTG GTTCAGGCCTCGGGGGCTTTGCTTTCTTTCTTGGGTATTCTTTTTCTTTTTATTCAGGAATACAAGGGATATGGGCACTTCAAATTGGAAAGGCATGCTC TAAACTTGCTTATTGCTGGACCGGCTTTGTGGGTGCTCGGATCCATACACAACTCATGCCAGATATATGAGAGAGCTGATGGGCATGTACAAATATTGCA ACAGAGCGTCCACATCCCATTTTTAATGGGAAGTTTGCTATTCTTGGTTGGTTCCATTCTCAATATTCATGAGCAAGCAGGACGGGGCCATCATGGACTA AGGCTATTGGGCAAGACTTGGGTCTGGACAGGCATCTATGGAAGTCTAATGATTTTTATAGGGGGATTAGCAAACGTAGTCAAGGTGTTCAAGATGCAGC AAATTGATGGACTACGGTTAGAGAAATTGAGAGGAGGGGCTCAAGAGCGTTTGATACGAGATAGGGAGGGTCACTCACCACTCATCCTAGAAGAGGAGAG GAGAAGGAAAATGACAGCAGCGGAAACGAGAGCAGCACATATTCCTGCAACAACTCCTTACAGGGATGTGCTTGTTGGCCAGCCATGA
AA sequence Show only first row Show all	>Potri.015G021100.1 pacid=42776461 polypeptide=Potri.015G021100.1.p locus=Potri.015G021100 ID=Potri.015G021100.1.v4.1 annot-version=v4.1 MVKLASARESRMYGPRLARNRGEYMNAGLCVFAAIVLVGGFVAELSKEPKSGLVLLLIALLLIMVVNLHDLVAHLAGIDYRFPLMGFDTQLALVEFAVPV VQASGALLSFLGILFLFIQEYKGYGHFKLERHALNLLIAGPALWVLGSIHNSCQIYERADGHVQILQQSVHIPFLMGSLLFLVGSILNIHEQAGRGHHGL RLLGKTWVWTGIYGSLMIFIGGLANVVKVFKMQQIDGLRLEKLRGGAQERLIRDREGHSPLILEEERRRKMTAAETRAAHIPATTPYRDVLVGQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24130			unknown protein		Potri.015G021100 [exp]	0	1
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Potri.010G154100 [exp]	4.89	0.9649	Pt-AGL8.2
AT4G33870			Peroxidase superfamily protein...		Potri.001G182400 [exp]	8.71	0.9641
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.007G119900 [exp]	9.79	0.9530
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.001G127700 [exp]	10.19	0.9326
					Potri.012G019350 [exp]	11.48	0.9382
					Potri.001G073350 [exp]	12.40	0.9530
					Potri.008G024601 [exp]	14.14	0.9030
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013200 [exp]	15.55	0.9494
					Potri.009G071750 [exp]	17.29	0.9481
					Potri.005G011350 [exp]	20.00	0.9338

Compare expression of checked genes

Potri.015G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.