Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41480 570 / 0 EMB9, ATDFA, GLA1 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) AT3G55630 129 / 6e-32 ATDFD, FPGS3 folylpolyglutamate synthetase 3, DHFS-FPGS homolog D (.1.2.3) AT5G05980 124 / 2e-30 ATDFB, FPGS1 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) AT3G10160 107 / 3e-24 ATDFC, FPGS2 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G060600 [exp] 125 / 1e-30 AT5G05980 724 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.010G197800 [exp] 122 / 3e-29 AT5G05980 686 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Potri.006G045400 [exp] 117 / 1e-27 AT3G10160 705 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1) Potri.016G041800 [exp] 105 / 1e-23 AT3G10160 708 / 0.0 folylpolyglutamate synthetase 2, A. THALIANA DHFS-FPGS HOMOLOG C, DHFS-FPGS homolog C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014939 [exp] 644 / 0 AT5G41480 558 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10038824 [exp] 631 / 0 AT5G41480 553 / 0.0 GLOBULAR ARREST1, EMBRYO DEFECTIVE 9, A. THALIANA DHFS-FPGS HOMOLOG A, Folylpolyglutamate synthetase family protein (.1) Lus10030161 [exp] 117 / 1e-27 AT5G05980 696 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10040261 [exp] 113 / 2e-26 AT5G05980 723 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10004694 [exp] 112 / 4e-26 AT5G05980 694 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2) Lus10001023 [exp] 93 / 8e-20 AT5G05980 599 / 0.0 folylpolyglutamate synthetase 1, DHFS-FPGS homolog B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08245 [poplar] [flax] Mur_ligase_M Mur ligase middle domain
Representative CDS sequence Show only first row Show all	>Potri.015G022400.1 pacid=42776171 polypeptide=Potri.015G022400.1.p locus=Potri.015G022400 ID=Potri.015G022400.1.v4.1 annot-version=v4.1 ATGAGGTTTTTGCCACTTCTCAACCAAACCTCAAAACGAAACCATCCAAAAAAGCCCATAATCCATTCTCTCACTATGGCAAGATTCCTCTTTTCTAAAT ACACAGAGGAACCAGAGCCAAAAGAGTTCATTGATTACTTGGATTCTCTTAAAAATTATGAGAAATTAGGTGTGCCTAAGGATGCTGGCACTGATTCAGA TGATGGACTCGATCTGGGTCGGATGCGGAGGCTCATGGACCGGCTTGGTAACCCACAGTCCAAATTCAAGGCAGTGCATGTTGCGGGGACAAAAGGGAAA GGATCAACAGCTGCATATCTGTCAAATATTTTGAGGGCAGAAGGCTATTCTGTTGGTTGTTATACTAGTCCACATATGATGAGTATAAGGGAAAGGATTT CATTAGGACAATCAGGCAATCCAGTGTCAACAAAGACTTTGAACAAACTGTTTCACATGATCAAACCAAAACTTGATGAGGCGATTCAATTAGAAAATGG GTCTCTGACGCATTTTGAGGTCCTCACTGCTACAGCATTCACCTTAATGGCAGAAGAGAAAGTTGACATTGCAGTCATTGAGGCTGGGCTAGGGGGTGCA AGAGATGCAACAAATATCCTTTGTAGTTCTGAACTTGCTGCTTCCGTTATAACAACAATTGGCGAGGAGCACTTGGCAGCACTTGGTGGTTCTTTGGAAA GCATTGCTGTGGCAAAGTCAGGAATCATTAAGTATGGTCGCCCAGTGGTTCTAGGCGGTCCTTTTCTTTCACATGTTGATCGTATACTACGTGATAAAGC GTCAGTGATGTGTTCTCCTGTGGTGTCAGCATCTGATGCTGGAATCAGAACTTCCATTAAAGGCCTCATCATACTCGATGGTAGACCTTGCCAATTGAGT GATATAATGATACAAGTTGAGAGGGATTTTCCACTGTTCATTGAGTTATCAGATGTGAAGCTGCGCATGCTTGGAAGGCACCAACTTCACAATGCATCAT CTGCAGCATGTGTGGCGCTCTGCCTTCGTGATCAAGGATGTCGAATTTCAGACAGATCTATTAGGGCTGGTTTGGAGAATACATTCTTGCTTGGAAGAAG TCAATTTCTATCATCCAAAGAAACTGAGGTGCTAGGACTTCCTGGAGCGACAATACTGCTTGATGGAGCTCACACTAAAGACTCTGCTAAAGCTTTGGTG GACACAGTACGGATGGCATTTCCAGATGCACGAGTGGCTCTTGTAGTTGCAATGGCAAGTGACAAAGACCATTTAGCTTTTGCGAGAGAATTTCTTTCAG GTTTGCAATTAGAGGCTGTCTTCCTCACAGAAGCCGACATTGCTGGGGGAAAATCTCGAACAACTTCAGCTTCCTTGTTAATGGATTGCTGGATTCAAGC TTCTGAAGAATTGGGCATTAATACTCTTCATGATGGAATGGAGAAGAACCGAGAATTGTTAGAGGAAAACAAAATCATATTAGCTACTGAGAAATCACCG GAGGTTGCCATGAGAGCTGCAAATGAGACTCTTAGAAGAAGAGCAGGTAACCGTTCCAGTGTTATTGTAGTCACAGGATCGTTGCATATTGTCTCATTAC TATTAGCTTCTCTGCATAGGTAA
AA sequence Show only first row Show all	>Potri.015G022400.1 pacid=42776171 polypeptide=Potri.015G022400.1.p locus=Potri.015G022400 ID=Potri.015G022400.1.v4.1 annot-version=v4.1 MRFLPLLNQTSKRNHPKKPIIHSLTMARFLFSKYTEEPEPKEFIDYLDSLKNYEKLGVPKDAGTDSDDGLDLGRMRRLMDRLGNPQSKFKAVHVAGTKGK GSTAAYLSNILRAEGYSVGCYTSPHMMSIRERISLGQSGNPVSTKTLNKLFHMIKPKLDEAIQLENGSLTHFEVLTATAFTLMAEEKVDIAVIEAGLGGA RDATNILCSSELAASVITTIGEEHLAALGGSLESIAVAKSGIIKYGRPVVLGGPFLSHVDRILRDKASVMCSPVVSASDAGIRTSIKGLIILDGRPCQLS DIMIQVERDFPLFIELSDVKLRMLGRHQLHNASSAACVALCLRDQGCRISDRSIRAGLENTFLLGRSQFLSSKETEVLGLPGATILLDGAHTKDSAKALV DTVRMAFPDARVALVVAMASDKDHLAFAREFLSGLQLEAVFLTEADIAGGKSRTTSASLLMDCWIQASEELGINTLHDGMEKNRELLEENKIILATEKSP EVAMRAANETLRRRAGNRSSVIVVTGSLHIVSLLLASLHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Potri.015G022400 [exp]	0	1
AT2G22530			Alkaline-phosphatase-like fami...		Potri.007G010600 [exp]	5.74	0.7255
AT5G17250			Alkaline-phosphatase-like fami...		Potri.003G059300 [exp]	9.94	0.6912
AT5G28350			Quinoprotein amine dehydrogena...		Potri.002G162000 [exp]	11.53	0.7047
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	16.61	0.7094
AT4G16180			unknown protein		Potri.008G104100 [exp]	31.55	0.7134
					Potri.008G206733 [exp]	35.91	0.7094
AT1G49180			protein kinase family protein ...		Potri.019G011300 [exp]	37.56	0.6555
AT5G53450		ORG1	OBP3-responsive gene 1 (.1.2)		Potri.015G016500 [exp]	40.80	0.6622
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	43.08	0.6322
AT3G28370			unknown protein		Potri.017G074100 [exp]	47.64	0.6837

Compare expression of checked genes

Potri.015G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.