Plant FIBer expression Database

Potri.015G022500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53220 165 / 1e-45 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G039200
[exp]
110 / 2e-25 AT5G53220 103 / 5e-24 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039326
[exp]
169 / 4e-49 AT5G53220 165 / 1e-49 unknown protein
Lus10001067
[exp]
176 / 4e-48 AT5G53220 162 / 8e-45 unknown protein
Lus10039327
[exp]
67 / 1e-12 ND /
PFAM info
Representative CDS sequence
>Potri.015G022500.5 pacid=42775061 polypeptide=Potri.015G022500.5.p locus=Potri.015G022500 ID=Potri.015G022500.5.v4.1 annot-version=v4.1
ATGGAGGTGAGCGCAGTGGAAATCAAAGTCTTGAAGAATTGTAAGTGTGGTGAATTTGAGAAGAGGATAGTAGAATTAGAATGGGAGATTCAAAAGAAAA
GCATCGAGTATCATGAACTTGAAGCTAAGCTTAAGGAACTTGGAGAGGAAAAAAATGGTCTTGCAAATGAAGTAAACGGTTTGAGGGCAAAGATTGGTGA
AGTTAAAGAGGTGGGTGGTGTGGTTGATTTGACCGCGGAGGAAGAGGAAGATAAGATGGTGCAGTTAATGATTGAGAACAAAGTTTTGGAATACGAGAAG
AAAAGCGCTGCAAGAGAAATTGAAGTTTGGAAGGAAAAGTACAAGGAATTGGAGTTGTATGCTCTGAAGCTGAATGGTGGTGTGGTATTGAAAGGTGGGA
AGCGAGGTGAAGATGGTGCAGATGCTACTTGCAATACTCCAGGCACACCTTTCAATGACATTATGCGTAGCCACACTGTTTGCGGAAAGCCAAGTGTCTA
TTTAGACTCTGAAGGGAAATGTGGTGGACAAGTTAGAAAGAGTTTATCATTTGAAGAAGGCAAAAGCCCAAGCAAAAAGATAGCCCCATCAACCCCAGGT
TATGTTCGTCGTGCTGCTCCAAATGTTATCAACATTGGTGACAGTGATGATGAATTTGATACCAACGGTATACAAACGTTTACTTCTGATGGCCAAGGAA
ATGGAAAGGTTTGCATTTCAATGGATCATCCACTAGAGAGAACTCCAGATAGCAAAAACCGAAAGATTTCAGAGATCAGTTTAAAGGGGGCAGTTTGCAA
CCAGATTCGCAAAGAATATATGGATGCTGTCTATGATAATGTTCCACATGTTTCGACTCCCAAAAGAAAAAGAGCTGCTAATGTTATTGCTAGTGATACT
GAGAGTGATGTAGATGACAATGTTCCAATATCTAAACTAAAGAGGTTGCATCTTCAGGAATCAATTCCTCATGTAGTAAGTATGGATAGTGTGCCTCCCA
AGAGTGATGATGTTAAAGGTCCTGTAACTCGTTCAAGGCGGCGTTTAGCAACATTGAGGAACGAGGAAGGAAAAGTTAAGGCAAGTAACTCTCCAAGTAA
CACCTCTAAAACCAACTATCGAGGAATTCCTACAACAGATGATGTTGAAGATAGTGAATCTGATGATGCTGGATCAGACAGTGAAGGTGGGAGCTTGGAT
GGATTTATTGTGAGTGATGACACCTATGCATCTGATGCTGATGATACTTCAAGTGAGTCAGAAGAGAAACCAAATGATGTAAATGATGCGTTTGGCCTGT
CAGATGATGGATCAGATGACGACACTGACTTTGGGATGATTTTGTCTAGATTTCAAAGGAGCAAGGATCATAAGTTCAAGTGGGAGTTTGAGGGAGATAT
GCTCTCAGACTTTGGTAAAGATCCTGAACTGTGTATGAAAGCTGTGTGTGCTCTCTATCGGCAGCAAAGTGATGAGGAAAAACTTAACAAGGAAACATTG
CATGGCAATGGTCGAGGATTTAGCAAATTTGATGCTCCCAGGGGCAGTAAGTTGGCTGAGTTTCTCATTGATGGAGACCCCTCTGGTGATCTAAAGAAAT
CTGTCCTGGAGCTGCAAGCGTACAACTCGAAAGGTGTTACACTGTGCCGAAAATTGGCTACTCACTACTCTAAACAATTGTTTCAGATCTACAAGAACAA
AGAGGATCCTCTTTTCCTCCCTCAAGACCAGGCGAGTCAATGA
AA sequence
>Potri.015G022500.5 pacid=42775061 polypeptide=Potri.015G022500.5.p locus=Potri.015G022500 ID=Potri.015G022500.5.v4.1 annot-version=v4.1
MEVSAVEIKVLKNCKCGEFEKRIVELEWEIQKKSIEYHELEAKLKELGEEKNGLANEVNGLRAKIGEVKEVGGVVDLTAEEEEDKMVQLMIENKVLEYEK
KSAAREIEVWKEKYKELELYALKLNGGVVLKGGKRGEDGADATCNTPGTPFNDIMRSHTVCGKPSVYLDSEGKCGGQVRKSLSFEEGKSPSKKIAPSTPG
YVRRAAPNVINIGDSDDEFDTNGIQTFTSDGQGNGKVCISMDHPLERTPDSKNRKISEISLKGAVCNQIRKEYMDAVYDNVPHVSTPKRKRAANVIASDT
ESDVDDNVPISKLKRLHLQESIPHVVSMDSVPPKSDDVKGPVTRSRRRLATLRNEEGKVKASNSPSNTSKTNYRGIPTTDDVEDSESDDAGSDSEGGSLD
GFIVSDDTYASDADDTSSESEEKPNDVNDAFGLSDDGSDDDTDFGMILSRFQRSKDHKFKWEFEGDMLSDFGKDPELCMKAVCALYRQQSDEEKLNKETL
HGNGRGFSKFDAPRGSKLAEFLIDGDPSGDLKKSVLELQAYNSKGVTLCRKLATHYSKQLFQIYKNKEDPLFLPQDQASQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G53220 unknown protein Potri.015G022500
[exp]
0 1
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Potri.009G106200
[exp]
1.41 0.8367 SQN.1
AT1G45231 S-adenosyl-L-methionine-depend... Potri.014G028000
[exp]
1.41 0.8462
AT4G34280 transducin family protein / WD... Potri.007G051500
[exp]
2.82 0.8030
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.012G137500
[exp]
4.89 0.8237
Potri.010G221301
[exp]
6.48 0.8067
AT1G12580 PEPKR1 phosphoenolpyruvate carboxylas... Potri.012G134600
[exp]
8.24 0.8226 Pt-CDPK5.3
AT5G15570 Bromodomain transcription fact... Potri.017G094900
[exp]
9.48 0.7730
AT5G52230 MBD13 methyl-CPG-binding domain prot... Potri.012G138300
[exp]
10.67 0.7711 MBD912
Potri.012G100450
[exp]
11.18 0.8075
AT1G28200 FIP1 FH interacting protein 1 (.1) Potri.014G109700
[exp]
12.36 0.7794

Potri.015G022500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.