Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43360 598 / 0 PHT1;3, ATPT4, PHT3 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) AT5G43370 589 / 0 PHT1;2, APT1, PHT2 ARABIDOPSIS PHOSPHATE TRANSPORTER 1, phosphate transporter 2 (.1.2) AT5G43350 588 / 0 PHT1;1, ATPT1 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) AT3G54700 581 / 0 PHT1;7 phosphate transporter 1;7 (.1) AT2G32830 580 / 0 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1) AT2G38940 579 / 0 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) AT5G43340 548 / 0 PHT1;6, PHT6 PHOSPHATE TRANSPORTER 6, phosphate transporter 1;6 (.1) AT1G76430 413 / 1e-139 PHT1;9 phosphate transporter 1;9 (.1) AT1G20860 395 / 1e-132 PHT1;8 phosphate transporter 1;8 (.1) AT4G08878 307 / 6e-102 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G061900 [exp] 671 / 0 AT5G43360 637 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Potri.010G071500 [exp] 611 / 0 AT2G38940 794 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G071600 [exp] 597 / 0 AT2G38940 762 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G223600 [exp] 597 / 0 AT3G54700 856 / 0.0 phosphate transporter 1;7 (.1) Potri.002G038900 [exp] 588 / 0 AT3G54700 823 / 0.0 phosphate transporter 1;7 (.1) Potri.010G071700 [exp] 585 / 0 AT2G38940 764 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.010G072000 [exp] 581 / 0 AT2G38940 765 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Potri.005G175500 [exp] 581 / 0 AT3G54700 728 / 0.0 phosphate transporter 1;7 (.1) Potri.001G318500 [exp] 569 / 0 AT2G32830 813 / 0.0 PHOSPHATE TRANSPORTER 5, phosphate transporter 1;5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027575 [exp] 785 / 0 AT5G43360 622 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10012860 [exp] 655 / 0 AT5G43360 669 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10030506 [exp] 655 / 0 AT5G43360 665 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10011826 [exp] 592 / 0 AT5G43360 868 / 0.0 PHOSPHATE TRANSPORTER 3, phosphate transporter 1;3 (.1) Lus10014754 [exp] 587 / 0 AT2G38940 904 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 2, phosphate transporter 1;4 (.1) Lus10033886 [exp] 585 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10003560 [exp] 581 / 0 AT3G54700 919 / 0.0 phosphate transporter 1;7 (.1) Lus10021191 [exp] 576 / 0 AT5G43350 858 / 0.0 ARABIDOPSIS THALIANA PHOSPHATE TRANSPORTER 1, phosphate transporter 1;1 (.1) Lus10016635 [exp] 553 / 0 AT3G54700 888 / 0.0 phosphate transporter 1;7 (.1) Lus10022548 [exp] 422 / 2e-144 AT3G54700 578 / 0.0 phosphate transporter 1;7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.015G022800.1 pacid=42775700 polypeptide=Potri.015G022800.1.p locus=Potri.015G022800 ID=Potri.015G022800.1.v4.1 annot-version=v4.1 ATGTCCTCGTCAAATTTAGCGGTGCTTAATGCTCTTGACAATGCTAGGATACAATTGTATCATGTCACTGCGATTATCATCGCAGGCATGGGATTTTTCA CCGATGCTTATGATCTTTTTTGCATCACCACCGTGTCGAAACTCCTCGGTCGCCTTTATTACTATGATCCAATCACAGGAAATCCAGGAAAGCTTCCAAC AAATGTCAACAACGTGGTTACTGGTGTAGCCCTAGTTGGAACACTAAGTGGCCAATTAGTCTTCGGTTGGGCTGGTGACAAACTAGGCCGCAAAAAGGTT TATGGTGTCACTTTGATTATCATGGTCATCTGTGCTATTGGCTCAGGCATATCCTTTGGATCATCAACCAAATCTGTGATTGGCACACTTTGTTTCTTCA GATTTTGGCTAGGGTTTGGCATTGGTGGTGATTATTCACTTTCCGCGACGATAATGTCTGAGTATGCAAACAAGAAAACTCGTGGGAAATTTATAGCTGC GGTGTTCGCTATGCAAGGAGTAGGAATTATTTTCGCCGGGCTAGTGTCAATGATTCTTTCTAAGATTTTTCTCTCTCGTTATCATGCTGTGCCATTTAGC AAAGATCCTATATTGTCTACGCAACCTCAGGCGGATTTTCTTTGGAGAATTGTGCTAATGCTTGGTGCTTTGCCCGCCATGTTAACATTCTATTGGCGGA TGAAGATGCCCGAAACCGGTCGTTACACCGCTCTAATTGAAGGGAATGCTAAAAAAGCCGCAGTCGATATGGGAAGAGTTCTTGATATTGATATCCAAGA AGAATCAGACAAGTTGTCCGAGATCAGGGCCTCAAACAATTACGAGCTACTATCCTGGGAGTTCTTTGATCGGCATGGATATCACTTGATAGGTACAATG AGCACATGGTTCTTGTTGGATATAGCATTCTATAGCCAAAATTTAACACAAAAGGACATATTTCCAACCATGGGATTAACGAAACAAGCTGCGGATGTTA GTGCTTTAGAGGAAGTCTATGAGACATCTCGTGCCATGTTCATCGTTGCATTGCTTGGCACATTCCCTGGTTACTGGTTCACCGTCTTGTTCATTGAAAG TCTAGGCCGGTTTTTTATCCAGGTCATGGGGTTTATCATGATGTCAAGCTTCATGCTGCTTATGGGAGTTTTCTATGATGGTCTTAAAGAACATAAGTGG CTATTTGCACTTCTCTACGGCCTAACATTTTTCTTTGCCAATTTCGGTCCGAATAGCACAACGTTTGTGCTTCCCGCCGAGTTGTTTCCAACCCGACTCA GATCAACTTGCCACGCATTGAGCGCCGCGGCCGGAAAGGCTGGAGCCATGATTGGGGCATTTGTGGTTCAAACATATACTTTGGATGGGGATGTTACCAA AATAAAGCGTGCTTTGTTGGCTCTGTCCTTTACCAATATTCTAGGGGCTTGTTTCACGTTCTTCCTGTCGGAGACCAAAGGGAAGTCTTTGGAGGAGATA TCCGGCGAAGATGGTGGTCAGAATAGGACGAGAACTGCTGCTAGCTAG
AA sequence Show only first row Show all	>Potri.015G022800.1 pacid=42775700 polypeptide=Potri.015G022800.1.p locus=Potri.015G022800 ID=Potri.015G022800.1.v4.1 annot-version=v4.1 MSSSNLAVLNALDNARIQLYHVTAIIIAGMGFFTDAYDLFCITTVSKLLGRLYYYDPITGNPGKLPTNVNNVVTGVALVGTLSGQLVFGWAGDKLGRKKV YGVTLIIMVICAIGSGISFGSSTKSVIGTLCFFRFWLGFGIGGDYSLSATIMSEYANKKTRGKFIAAVFAMQGVGIIFAGLVSMILSKIFLSRYHAVPFS KDPILSTQPQADFLWRIVLMLGALPAMLTFYWRMKMPETGRYTALIEGNAKKAAVDMGRVLDIDIQEESDKLSEIRASNNYELLSWEFFDRHGYHLIGTM STWFLLDIAFYSQNLTQKDIFPTMGLTKQAADVSALEEVYETSRAMFIVALLGTFPGYWFTVLFIESLGRFFIQVMGFIMMSSFMLLMGVFYDGLKEHKW LFALLYGLTFFFANFGPNSTTFVLPAELFPTRLRSTCHALSAAAGKAGAMIGAFVVQTYTLDGDVTKIKRALLALSFTNILGACFTFFLSETKGKSLEEI SGEDGGQNRTRTAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Potri.015G022800 [exp]	0	1	10
AT5G35405			Protein of unknown function (D...		Potri.002G229600 [exp]	9.21	0.9468
AT5G35405			Protein of unknown function (D...		Potri.002G229650 [exp]	10.09	0.9468
AT3G11930			Adenine nucleotide alpha hydro...		Potri.006G198200 [exp]	10.90	0.9468
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.005G219201 [exp]	11.57	0.7922
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027900 [exp]	14.83	0.9426
					Potri.009G102850 [exp]	15.96	0.9249
					Potri.014G065200 [exp]	17.32	0.9417
AT4G23280		CRK20	cysteine-rich RLK (RECEPTOR-li...		Potri.011G027600 [exp]	17.94	0.9308
AT1G15100		RHA2A	RING-H2 finger A2A (.1)		Potri.007G086200 [exp]	19.07	0.9339
					Potri.001G259204 [exp]	20.19	0.9156

Compare expression of checked genes

Potri.015G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.