Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53310 249 / 3e-84 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033100 [exp] 392 / 2e-140 AT5G53310 259 / 2e-88 myosin heavy chain-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039322 [exp] 313 / 2e-109 AT5G53310 247 / 2e-83 myosin heavy chain-related (.1) Lus10027569 [exp] 306 / 2e-105 AT5G53310 241 / 5e-80 myosin heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF06017 [poplar] [flax] Myosin_TH1 Unconventional myosin tail, actin- and lipid-binding
Representative CDS sequence Show only first row Show all	>Potri.015G023400.1 pacid=42776225 polypeptide=Potri.015G023400.1.p locus=Potri.015G023400 ID=Potri.015G023400.1.v4.1 annot-version=v4.1 ATGAGCAGATTCAACCGGCGAGTCCAAATCCCCGATTTACAACTCCCCAAATACGACGATGCAGAAGAAGAAGGAGATTATAGTGATAATAATGGAGTAG CGCGATTAACAACAACAGGGAGCAATGTGAGTGACGATCAAGAACCAGTCATGGGTGTTAAAGTTCTAAGACAAGCTTCGCGTCATAGAGATATTAAAGG GGATTATCTTGATGTTCCTTCCCATTCGTACTTGATGAAGATTTTTCAGAAACAAGGTGATAAGCAAGTTCTCTTTGCTGATAAAGTTTTGAAATTCACT GCTTCAGGAAAGATGAAACACCGCATATTGTTAATAACTGACTTTGCCCTTTACATTATTGACCCGGAGACTAATGCGCTTAAACGACGAATAGCTCTGG CAGCTGTAGAAAAGACATGTTTGAGTGACTTAAGTGATAATTTCCTTGCAATTATCATTCCAAAAGAGTATGATCTTCTCATGGCCAGCACTAGAAAGAC TGAAATAGTTGCAGTGTTAGTTGAAGCTACCAAGAGTGCTTCTGACTTTGAACTTGAGGTGGTTTTTTCCAATAGCTTTGAGTATAATGCAGATGCTGAA TTGGTAAAGGAAATCCAGTTCGAGGAAGTTGAAGGAGGAGTTAAAACCAGAATCACGAGGAAATGA
AA sequence Show only first row Show all	>Potri.015G023400.1 pacid=42776225 polypeptide=Potri.015G023400.1.p locus=Potri.015G023400 ID=Potri.015G023400.1.v4.1 annot-version=v4.1 MSRFNRRVQIPDLQLPKYDDAEEEGDYSDNNGVARLTTTGSNVSDDQEPVMGVKVLRQASRHRDIKGDYLDVPSHSYLMKIFQKQGDKQVLFADKVLKFT ASGKMKHRILLITDFALYIIDPETNALKRRIALAAVEKTCLSDLSDNFLAIIIPKEYDLLMASTRKTEIVAVLVEATKSASDFELEVVFSNSFEYNADAE LVKEIQFEEVEGGVKTRITRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53310			myosin heavy chain-related (.1...		Potri.015G023400 [exp]	0	1
AT1G53490			RING/U-box superfamily protein...		Potri.001G383900 [exp]	8.42	0.8373
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Potri.003G039700 [exp]	8.77	0.8754
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	9.48	0.8991
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	11.66	0.8734
AT1G61850			phospholipases;galactolipases ...		Potri.004G018700 [exp]	16.97	0.8733
AT1G15780			unknown protein		Potri.003G028401 [exp]	20.34	0.8505
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	20.39	0.8622
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	21.33	0.8791
AT4G14240			CBS domain-containing protein ...		Potri.008G202100 [exp]	22.22	0.8677
AT1G49590			C2H2 and C2HC zinc fingers sup...		Potri.009G105500 [exp]	24.00	0.7844

Compare expression of checked genes

Potri.015G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.