Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 639 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 552 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 545 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 519 / 3e-177 Leucine-rich repeat protein kinase family protein (.1.2) AT1G64210 512 / 2e-175 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 489 / 1e-165 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 457 / 2e-153 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 416 / 2e-137 RKL1 receptor-like kinase 1 (.1) AT3G17840 403 / 3e-132 RLK902 receptor-like kinase 902 (.1) AT1G68400 396 / 3e-129 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033200 [exp] 1050 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 749 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 748 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 562 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 560 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 539 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 523 / 2e-179 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 497 / 1e-168 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 436 / 2e-145 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039321 [exp] 738 / 0 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 728 / 0 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 697 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014943 [exp] 687 / 0 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 670 / 0 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 669 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 550 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 548 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 548 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 545 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G023500.1 pacid=42776570 polypeptide=Potri.015G023500.1.p locus=Potri.015G023500 ID=Potri.015G023500.1.v4.1 annot-version=v4.1 ATGATTTGTGTAGAAACTTTGCTGTTCAGTTGCAAATGTGCTCAACAGTTTGGTTCTGAGAGAATGAACATGAACAAGGGCCTGTTCTTCATTTTATGTG CTTTTCTCTTCTTTGGAGCAGTTTTCTTGCCAACCACCGCTGACCCGGTTGAAGATAAGAAAGCTTTATTATATTTCCTTCACAATATTCATCTCTCTCG CCCTGTCAATTGGAAGGAGAGCACTTCTGTGTGCAATAACTGGACTGGAGTGTCCTGTAGCAATGATCACTCTAGAGTTACAGCCCTCGTGTTGCCAGGA GTAGGATTTCGTGGCCCAATTCCACCCAACACTCTTAGGCGTTTGTCAGCAATTCAGATCCTGAGCCTCGGATCTAATGGTATATCAGGTTCTTTCCCTT ATGATGAACTATCCAAACTCAAGAACTTAACCATCCTTTTTCTTCAATCCAACAACTTCTCTGGCCCATTGCCTTCAGATTTCTCAGTTTGGAATAATCT CACAATTCTTAATCTTTCCAATAATGGCTTCAATGGGAGCTTTCCTCCTTCAATATCAAATTTGACCCACCTCACATCTTTGAACCTTGCTAACAACTCC CTTTCAGGCAATATTCCTGATATAAATGTCTCTAGTTTGCAACAGCTAGAATTAGCCAACAATAATTTTACTGGAAGTGTGCCCAAGTCTCTTCAAAGAT TTCCAAGTTCTGCATTTTCTGGTAACATTCTTTCATCAGAAAATGCCCTTCCTCCTGCTCTTCCAGTTCATCCACCAAGTTCTCAACCATCAAAAAAATC CTCAAAACTAAGGGAACCTGCAATCCTGGGGATTGCTCTAGGTGGCTGTGTACTTGGGTTTGTGGTTATTGCTGTGTTGATGGTTTTGTGCCGCTTTAAG AAAAATAGGGAAGGTGGGTTAGCAACAAAGAAGAAAGAATCGTCTTTGAAGAAAACAGCTTCAAAGAGCCAAGAGCAGAACAACAGGCTATTTTTCTTCG AGCATTGTAGTCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCAGAGGTGCTTGGGAAGGGAACGTTTGGAATAGCTTATAAGGCCGCGCTCGA GGATGCATCCACAGTGGTGGTGAAGAGGTTGAAGGAAGTGACTGTGCCCAAAAAGGAGTTTGAGCAGCAAATGATTGTGGCTGGGAGTATTAGGCATGCG AATGTGTCTCCACTAAGGGCATATTACTATTCCAAGGATGAGAGACTTATGGTCTATGATTTCTATGAAGAGGGCAGTGTGTCTTCAATGCTACATGGTA AGAGAGGGGAGGGCCACACTCCTATAGACTGGGAAACAAGGCTGAAGATCGCAATTGGTGCAGCAAGGGGCATTGCTCATGTCCACACGCAGAATGGTGG CAAACTTGTCCATGGAAACATAAAATCCTCAAACATTTTCCTCAATTCCCAAGGATATGGCTGTGTGTCCGATATCGGTTTGGCATCACTGATGAGCCCA GTGCCCCCACCAATGATGAGGGCTGCAGGCTATCGAGCCCCAGAAGTAACAGACAGTAGGAAAGCAGCCCATGCATCTGATGTCTACAGTTATGGGGTCT TGCTACTTGAGCTTCTCACAGGAAAATCTCCCATGCACGCCACAGGTGGTGATGAAGTTGTTCACTTGGTGAGGTGGGTGAATTCTGTGGTAAGAGAGGA GTGGACTGCTGAAGTATTTGATTTAGAGCTCTTAAGGTATCCCAATATTGAGGAGGAAATGGTAGAGATGTTACAAATAGGAATGGCTTGTGTGGTGAGG ATGCCAGAGCAGAGACCCAAAATGCCTGATGTGGTGAAAATGGTGGAGGAAATTCGGAGACTAAGCACCGACGACCGGCCATCCACTGAAAGTAAATTAG AAATTGCAGTCGCAACCCCATCACCACAGACAACTGAAGTAGCTTCTACCTCTTCAGCTCAACAGTAA
AA sequence Show only first row Show all	>Potri.015G023500.1 pacid=42776570 polypeptide=Potri.015G023500.1.p locus=Potri.015G023500 ID=Potri.015G023500.1.v4.1 annot-version=v4.1 MICVETLLFSCKCAQQFGSERMNMNKGLFFILCAFLFFGAVFLPTTADPVEDKKALLYFLHNIHLSRPVNWKESTSVCNNWTGVSCSNDHSRVTALVLPG VGFRGPIPPNTLRRLSAIQILSLGSNGISGSFPYDELSKLKNLTILFLQSNNFSGPLPSDFSVWNNLTILNLSNNGFNGSFPPSISNLTHLTSLNLANNS LSGNIPDINVSSLQQLELANNNFTGSVPKSLQRFPSSAFSGNILSSENALPPALPVHPPSSQPSKKSSKLREPAILGIALGGCVLGFVVIAVLMVLCRFK KNREGGLATKKKESSLKKTASKSQEQNNRLFFFEHCSLAFDLEDLLRASAEVLGKGTFGIAYKAALEDASTVVVKRLKEVTVPKKEFEQQMIVAGSIRHA NVSPLRAYYYSKDERLMVYDFYEEGSVSSMLHGKRGEGHTPIDWETRLKIAIGAARGIAHVHTQNGGKLVHGNIKSSNIFLNSQGYGCVSDIGLASLMSP VPPPMMRAAGYRAPEVTDSRKAAHASDVYSYGVLLLELLTGKSPMHATGGDEVVHLVRWVNSVVREEWTAEVFDLELLRYPNIEEEMVEMLQIGMACVVR MPEQRPKMPDVVKMVEEIRRLSTDDRPSTESKLEIAVATPSPQTTEVASTSSAQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23740			Leucine-rich repeat protein ki...		Potri.015G023500 [exp]	0	1
AT1G75640			Leucine-rich receptor-like pro...		Potri.005G235100 [exp]	4.58	0.7960
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066400 [exp]	6.32	0.7818
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	9.79	0.7732
AT1G67590			Remorin family protein (.1.2)		Potri.010G056800 [exp]	11.83	0.7716
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.010G239100 [exp]	12.32	0.6992	PETF.5
AT3G25640			Protein of unknown function, D...		Potri.010G131600 [exp]	12.96	0.7050
AT3G08840			D-alanine--D-alanine ligase fa...		Potri.006G106000 [exp]	17.43	0.7191
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	18.89	0.7583
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Potri.001G105100 [exp]	19.79	0.7501
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.009G084700 [exp]	23.36	0.7391

Compare expression of checked genes

Potri.015G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.