Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 337 / 2e-116 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024100 [exp] 547 / 0 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024150 [exp] 536 / 0 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G023900 [exp] 536 / 0 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.012G033866 [exp] 471 / 1e-169 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.014G091700 [exp] 353 / 1e-122 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G165700 [exp] 347 / 2e-120 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091600 [exp] 343 / 5e-119 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.015G024200 [exp] 342 / 2e-118 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.002G242000 [exp] 340 / 1e-117 AT5G24090 387 / 3e-136 chitinase A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040420 [exp] 335 / 6e-116 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10023535 [exp] 335 / 7e-116 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10009215 [exp] 333 / 5e-115 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10040419 [exp] 333 / 7e-115 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10009216 [exp] 321 / 3e-110 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10037985 [exp] 319 / 2e-109 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10023534 [exp] 316 / 3e-108 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10010137 [exp] 303 / 5e-103 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10001868 [exp] 291 / 8e-99 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10037984 [exp] 277 / 4e-91 AT5G24090 322 / 1e-108 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00704 [poplar] [flax] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Potri.015G024000.1 pacid=42776187 polypeptide=Potri.015G024000.1.p locus=Potri.015G024000 ID=Potri.015G024000.1.v4.1 annot-version=v4.1 ATGGCTTGCCAAGCAAAAGCTATCACCCTTCTTCTATCCATCTTAGCTGTCTCCTTATGCAAACCCTCAGATGGTGCAGGCATCGCCATCTATTGGGGTC AAAATGGCAATGAAGGCAGCTTAGCTGATACTTGTAACACAGGAAACTATCAATTTGTGAACGTAGCTTTCCTATCTAGTTTCGGCAATGGCCAATCTCC AGTGCTGAACCTAGCAGGCCATTGTGACCCCAGCGCCGGTACTTGCACCGGCATAAGCAATGACATTAGATCTTGTCAAAATCAAGGAATCAAGGTGCTG CTTTCCATTGGAGGTGGCGCAGGCAGCTACTCCCTTTCATCGGCCGACGATGCAGGGCAAGTTGCAAACTATATCTGGAATAACTTCCTTGGTGGTCAGT CCAGCTCACGTCCGCTAGGCGATGCCATCCTAGATGGGGTTGATTTTGACATCGAGGCAGGTTCAGGCCAGTTCTGGGATGATCTTGCTAGGGCACTTAA TGGCTTTAGCCAACAAAGGAAGGTATACTTAGCTGCAGCTCCACAATGCATCTTCCCTGATGCTAATCTAGACACTGCAATCAAAACTGGCCTCTTTGAT TACGTGTGGGTTCAATTCTATAACAATCCTCCATGTCAATACGTAAATGATGCTACCGGTCTCTTGAGTGCATGGAACCAATGGACCACAGTTCAATCCA ATCAAATATTCCTGGGACTACCTGCTGCTCCCGAGGCAGCCCCTAGTGGTGGATTCATCCCTGCTGATGTGCTCATTTCTCAGGTCCTTCCATCTATCAA GGGTTCACCCAAGTATGGAGGCGTGATGCTCTGGAGCAAGCAGTATGACAATGGGTATAGTGCAGCTATAAAGGGCAGTGTCTAG
AA sequence Show only first row Show all	>Potri.015G024000.1 pacid=42776187 polypeptide=Potri.015G024000.1.p locus=Potri.015G024000 ID=Potri.015G024000.1.v4.1 annot-version=v4.1 MACQAKAITLLLSILAVSLCKPSDGAGIAIYWGQNGNEGSLADTCNTGNYQFVNVAFLSSFGNGQSPVLNLAGHCDPSAGTCTGISNDIRSCQNQGIKVL LSIGGGAGSYSLSSADDAGQVANYIWNNFLGGQSSSRPLGDAILDGVDFDIEAGSGQFWDDLARALNGFSQQRKVYLAAAPQCIFPDANLDTAIKTGLFD YVWVQFYNNPPCQYVNDATGLLSAWNQWTTVQSNQIFLGLPAAPEAAPSGGFIPADVLISQVLPSIKGSPKYGGVMLWSKQYDNGYSAAIKGSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G024000 [exp]	0	1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G024100 [exp]	1.00	0.9995	Pt-CHI3.8
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G014100 [exp]	5.47	0.9976
AT2G21100			Disease resistance-responsive ...		Potri.001G214600 [exp]	6.32	0.9969
					Potri.001G091400 [exp]	11.48	0.9967
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374800 [exp]	11.83	0.9967
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374700 [exp]	13.26	0.9967
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374600 [exp]	13.41	0.9963
AT2G15220			Plant basic secretory protein ...		Potri.009G094600 [exp]	15.65	0.9967
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G005150 [exp]	20.00	0.9956
AT5G06740			Concanavalin A-like lectin pro...		Potri.004G209300 [exp]	20.34	0.9951

Compare expression of checked genes

Potri.015G024000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.