Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52910 1018 / 0 ATIM timeless family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038831 [exp] 1188 / 0 AT5G52910 959 / 0.0 timeless family protein (.1) Lus10014946 [exp] 677 / 0 AT5G52910 910 / 0.0 timeless family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05029 [poplar] [flax] TIMELESS_C Timeless PAB domain
Representative CDS sequence Show only first row Show all	>Potri.015G024300.2 pacid=42774955 polypeptide=Potri.015G024300.2.p locus=Potri.015G024300 ID=Potri.015G024300.2.v4.1 annot-version=v4.1 ATGGAAATGCAAGGTTTAGCTGGTATCTGCGTCGGTCTAGGCACCCCTGAAGAAGACGACAACGGAAATCGAATTGGTTACACTAAAGGCGCTAACTGCT TAGATAATTTAAAAGATTTGTTGAGATTCTTAAGGCGCGATGATCCACAAACGCGAGGAGTATTTAAGCAAGTGTGTAAATGGAATACTGTGGGGAAAGA TTTAATGCCGATTATTCAGTATTGTCAAGATGATCGTAATTTGGTCTTAAATGCAGTTAAGGTTCTAGTTTTTCTTACTATGCCAATTGAGCCGTCTTCG AGTGATATATGGCTACAAGTAGAGTATTTATGGGGTTTGAAGGCTGCAATTACGCTTAGTGGTACGATTCCAGTGGTTGTTTCGCTTCTTGAAGGCCCAT TGGAGAATTTGGACCGTGAGGCGTTTACTGAGGATGACTGGAAATTGGTTCAGTTGGTGCTGACATTGTTTAGAAACGTTCTAGCAGTTCATGATTTTTC AATGTTGCAGAAAGTTGGGGAATCAGCAAGTCAGTTTTTGTCTCTAAGGGATAGGTTTTTGGAGCTTTTGTTCCATGAGAATGTAATGGACATCATTCTA GTTATAACTCAGAATATAAAGGGTTCATGCAGTTATTTTCTTCATGATAACTTGCTTTTATTAGAAATTTTCCATTACATTTTCATGGGTCAAGAGCCAG GGTTGATTGTTAATGCCGGTCTAAAGGATTTCAAGGTTTGTGGAAGCAGCACTTCTCTTGACATCCTCAAGTCCATTATGAAAGAAGAAGAACAAAAAAA AATGAAGCTTTCTAGACAACGAAACGTGGTCCGTCATTCACAATTTAGTGGAACCTTTACCTGGCTTACCATGGATGGTTCTAAAGCAGTATGCTTAGGA AACCCTAGTTCTGCTTCTCAGATTCTACTTAAACCTAATAAAGCTCAAAAGGGTCCCAGTAAAAAGATTTTGTGGGACCATGGGAGATTACCTTCAATGA AGGATAATATTTTGGAGTTACTGCATGATTTTCTGAACCAGTTTCTATCAGGGGGTTACAATGATTTGATGGAGTCGATCCGTGAAGATATCGAGAAGGA GCATCATGCAATTCAAAACAGTGACATTGTTGTTTTCTTTCAGGTTGCTCAGTTTGTTACTTCTTTTCAATATCACAAGTATATTACTTCCAAGCCAAAT ATGGAAAAAGACAATTCTCAAGCCTTCTCTGATGAGTATGCTGATAACACATCATTCAAAGGAGGTATATGTGGACCCATTGCAGCATCAATGAACGAAT CAATGTTTCTACTAGTCATTTCAAGATGGAAAAATGCTTTTGAAGGCTTGAAGGTGACACATGATTATAAGTTTCTGTCTGCAGCTGGTGCTCTTATGAG AATTATGATTCGCATGTTAGATTTGGTGCTTAAGTTACTGCCAGGAGATTCTAAGGAGCCTTTAACAGCTCGCATCCTGCTTTACAAGTTGGAGCCTTTA ACAGCTCGCATCCTGCTTTACAAGTTGTTCTATGATCAGACTGATCAAGGAATGACTCAGTTCCTCCTGAGCCTGATCAAATCATTTGACACACACAAGC AAACCAAAAGTGATCTTTCAGATCTGGTAGAAATGATTCATGTACTTGTAAGGCTGATGGAGAATCTTCAAACACGTGGTACCTTGAGAGTTTCTAAGAA GTCGAGGAGAAGTAGAAAGAAGAAACCATTGAGTGACAAGAAGGAAAATGGAAATGAACAGTGTAATGTTGAAGCCACTATTGAGGATCCCACTGCTCTG TCTAATAGTGAACAATCAACTGTTTTGCAAAAGAAAAGCCCAGAAATTGCAACTTCTGGTGACCAAGCAAACATGAATGTTGATGTTCTTGAAAAGCCTG AAATATTTGTACCAGAGATGGAGAATCTTGGCAGCACTTTGCAGATGGAGAATAAAAAGATTGATATTGATGATCTTTCTTGCAGTTCTGATGATTCTTC AGGCGATGAGCAACCTGCTGAAAATTATGAAGTTGATTTTAAAGTCTCTACTTTTATATCATCTTTGGCAAACCACAGCATTATTCAGAATTTGTGCTGG TTACTTAGGTTCTATAAGAACAATTCTGTCAGCACAAATCACTACATAGTATGCATGTTGCAGAGAATCACTGATGATTTAGATCTCTCTCCAATGCTAT ATCAGTTATCGCTGCTCACGATATTCTATGAGATTCTGGAAGAGCAAAAGTCATGTCCATGCAAGGAATATGCAAATATTGTTGATTTCCTTACGAGTTT GGTTAGAAGAATGCTAAGAAAAATGAAGAATCAGCCCCTTCTTTTTGTAGAAGTTCTCTTTTGGAAATCCCGGAAAGAATGCCATTACATTAATGCTGAA TATATGTTGCACGAGCTTGGTCATTTGAAGAAAGAAAGTGCAGGCTGGGGAAATGCTTCAGCAAACAAAGATATTGGGTCATCACAGGGGAAGAGATGGG CTCCTAGAAGCATAGCAGATGCACTGGGTGAGGATGAAGCAGATGTTGTGATCCCTCATGAACTGGGATATCAGAATGGAGGAGATGCTGCAGAACATGA AAGTGTAAGTGTTCCTAGGAGGAAGAGAAGATTTGTTCTGACAGACGAGATGGAGATGAAAATAAAAGATCTGTATGAGAAATTCAAAGATGATGAGAAT TGCAGTCATTTGATTGCGGAATCCTTAGATCCTGATGGTCAAGTTTCACGAGCACAAGTTATCAACAAGCTCAAGCAGCTAGGATTGAAAGTTGCATCGA AGAAAAGGAAGCGCTCTGTTGGTAGACCATTTTCTACTAATCCTGATCAACTTGGTGAGAATGGAGAGATAATTGAAAAGGAAAGCAATCTTCACAATTC AATTGATTTAGAAGGAAGTTTGCCAAGGCTGAGCACTAGGAAAAGAGTGAGGGCCTTCAACAAAGATCAGGAGGAAATGATTAAAGCGTTATTTGAGCAG TTCAAAGACCATCGAAGATGCAGCTATATGATTGCAAATGCAATGGGATCTGATAATTCATTCACAGCTGCCCAAGTGTCCAGAAAACTCAAGCAACTTG GTTTACGTGCTCCTCGGCAGAAGCAGTCTGAGACAGATATGCATCTCAGAGACGAGGAACTGAATAGCTTTTCTGTTGGAGGACAAGATTCTGATGATGA AACATTGTTATCGTTAAAAAATAGGAGTAAAAACAAGGATGATGGTGGATTATTTGGTGATGAGTTGCCAAGCCAGAACATTGAAGGAGAATCTAGTGAT TCTGATGATGAACTCCTATGCTCTATTCTCAAGCCTAAAAACAATGCTGGTGATAGATTGGTTGCTGGGAAACAGAATAACGAAGGAGAGATTTCTGACA ATTCTGATAAAGAAATCTTGAGCTCTAAAATGAATAAAACCAAGAAGCTCCTTTCGAAGGCAAAAGGTAAAGAGCTCAGAACTTCTTCATCTGAGAGTGA AATGCCTGATGAAGATGCCGGGAATGAAGCTCTTAACGATCTAGAACGAAGGGACAGAGGCAGCGAGTCCACTGGGCAGGATGTTGTAGGGGTTGATGAG GATACTGTTCTTGACCATGGCAGCAAGGAAGGTGCTTCAGAAGCTGAAGCAACTAACAGCAGAAGTGGAAAATCAACAGGGGTTTCACCAGTCAATTATG TAGATGATATACCAGATCAACAAATGGATGATGCATTGGAAGATTTGGAGGATGCTGCAGCTTCTGATACAGTAGTGACAAGTGCCAGACTTAAAAGGAA GTTGAGGATGGTAGTTGATCTCGAGGATGAAGATGATGATTAA
AA sequence Show only first row Show all	>Potri.015G024300.2 pacid=42774955 polypeptide=Potri.015G024300.2.p locus=Potri.015G024300 ID=Potri.015G024300.2.v4.1 annot-version=v4.1 MEMQGLAGICVGLGTPEEDDNGNRIGYTKGANCLDNLKDLLRFLRRDDPQTRGVFKQVCKWNTVGKDLMPIIQYCQDDRNLVLNAVKVLVFLTMPIEPSS SDIWLQVEYLWGLKAAITLSGTIPVVVSLLEGPLENLDREAFTEDDWKLVQLVLTLFRNVLAVHDFSMLQKVGESASQFLSLRDRFLELLFHENVMDIIL VITQNIKGSCSYFLHDNLLLLEIFHYIFMGQEPGLIVNAGLKDFKVCGSSTSLDILKSIMKEEEQKKMKLSRQRNVVRHSQFSGTFTWLTMDGSKAVCLG NPSSASQILLKPNKAQKGPSKKILWDHGRLPSMKDNILELLHDFLNQFLSGGYNDLMESIREDIEKEHHAIQNSDIVVFFQVAQFVTSFQYHKYITSKPN MEKDNSQAFSDEYADNTSFKGGICGPIAASMNESMFLLVISRWKNAFEGLKVTHDYKFLSAAGALMRIMIRMLDLVLKLLPGDSKEPLTARILLYKLEPL TARILLYKLFYDQTDQGMTQFLLSLIKSFDTHKQTKSDLSDLVEMIHVLVRLMENLQTRGTLRVSKKSRRSRKKKPLSDKKENGNEQCNVEATIEDPTAL SNSEQSTVLQKKSPEIATSGDQANMNVDVLEKPEIFVPEMENLGSTLQMENKKIDIDDLSCSSDDSSGDEQPAENYEVDFKVSTFISSLANHSIIQNLCW LLRFYKNNSVSTNHYIVCMLQRITDDLDLSPMLYQLSLLTIFYEILEEQKSCPCKEYANIVDFLTSLVRRMLRKMKNQPLLFVEVLFWKSRKECHYINAE YMLHELGHLKKESAGWGNASANKDIGSSQGKRWAPRSIADALGEDEADVVIPHELGYQNGGDAAEHESVSVPRRKRRFVLTDEMEMKIKDLYEKFKDDEN CSHLIAESLDPDGQVSRAQVINKLKQLGLKVASKKRKRSVGRPFSTNPDQLGENGEIIEKESNLHNSIDLEGSLPRLSTRKRVRAFNKDQEEMIKALFEQ FKDHRRCSYMIANAMGSDNSFTAAQVSRKLKQLGLRAPRQKQSETDMHLRDEELNSFSVGGQDSDDETLLSLKNRSKNKDDGGLFGDELPSQNIEGESSD SDDELLCSILKPKNNAGDRLVAGKQNNEGEISDNSDKEILSSKMNKTKKLLSKAKGKELRTSSSESEMPDEDAGNEALNDLERRDRGSESTGQDVVGVDE DTVLDHGSKEGASEAEATNSRSGKSTGVSPVNYVDDIPDQQMDDALEDLEDAAASDTVVTSARLKRKLRMVVDLEDEDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	0	1
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	1.00	0.9529
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	2.00	0.9479	Pt-SOM1.1,CHR905
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	2.44	0.9394
AT5G05240			Uncharacterised conserved prot...		Potri.013G157700 [exp]	3.87	0.9275
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	5.19	0.9319
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	5.47	0.9387	Pt-UBP21.2
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	5.65	0.9388
AT2G23530			Zinc-finger domain of monoamin...		Potri.007G036200 [exp]	5.65	0.9271
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	6.00	0.9313	DMT901,Pt-MET1.2
AT1G26330			DNA binding (.1.2)		Potri.008G097700 [exp]	6.32	0.8917

Compare expression of checked genes

Potri.015G024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.