Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26560 1768 / 0 ATP-dependent RNA helicase, putative (.1) AT1G32490 808 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 785 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT5G13010 766 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G47250 721 / 0 RNA helicase family protein (.1) AT3G62310 719 / 0 RNA helicase family protein (.1) AT4G18465 622 / 0 RNA helicase family protein (.1) AT1G26370 598 / 0 RID1 RNA helicase family protein (.1) AT1G27900 566 / 0 RNA helicase family protein (.1) AT4G16680 550 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034200 [exp] 1843 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 801 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G172500 [exp] 779 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 727 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 720 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 634 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 607 / 0 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 566 / 0 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 434 / 7e-129 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036783 [exp] 1777 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 1509 / 0 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 783 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10033690 [exp] 692 / 0 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 679 / 0 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 570 / 0 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 569 / 0 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10025127 [exp] 567 / 0 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 555 / 0 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10027147 [exp] 550 / 0 AT3G26560 555 / 0.0 ATP-dependent RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0021 [poplar] [flax] OB PF00575 [poplar] [flax] S1 S1 RNA binding domain CL0021 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2) CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.015G024400.1 pacid=42774832 polypeptide=Potri.015G024400.1.p locus=Potri.015G024400 ID=Potri.015G024400.1.v4.1 annot-version=v4.1 ATGGCAACCGCAGCAGAAAACGACGCCGGATTGAAGAAGCTCGAGTACCTCTCCCTCGTCTCCAAGGTCTGCAGCGAACTCGAAACTCACTTGGGGTTTG GAGATAAGATCTTAGCTGAGTTCATCACCGAGTTAGGTCGGAGTTGCGAAACAGTAGATGAGTTCGATGCGAAGCTGAAGGAAAATGGAGCTGAAATGCC TGATTACTTTGTTCGGACATTGCTGACGATTATTCACGCGATTTTGCCGCCGAAAGCGGAGAAGGAGGGGAAGAAAGATAAGGAGAATGATGGGTCAGGT AAAGATTCTAAATTTAAAGCTCTCTCGATTAAAGATAGTAGAGACAGAGTGAAAGAAATTGATAGGGAATTGGAAATTGAAGCTGAAGAGAAAAGTAGAA GAGAGAATGAAGACAGGCACAGAGAAAGAGATAACGATGACAGACATATAGAGAGAGATAGGAGAGGGAGAGATAGGGATAGAGAGAGGGATAGGGATAG GGATACAGATAGAGAGAGAGAAAGAGATATGTATGATAGAGATGATAGGAGGAGAGATAGAGGAAGAAGGAGAGATGGACATGATATAGAGGATGGTGAA GGTGAGAGGGAGAGAAGGAATGGGAAACATGGGTATGGTGGTGGTAATAGTAATGAGCCGGAATTGTATGGGGTTTATAAGGGGAGGGTGTCGAGGGTGA TGGATACAGGTTGTTTTGTCGAGTTGAGTGATTTTAAGGGGAAGGAGGGTTTGGTTCATGTTTCGCAGATTGCAACCAGGAGAGTTGGGAATGCAAAGGA CGTGGTTAAGAGGGACCAGGAAGTTTATGTTAAGGTGATTTCAGTGTCGGGGAACAAGTTGAGTCTTTCGATGAGGGATGTTGATCAGAATAGTGGGAAA GATTTGCTTCCATTGAAGAAGAGGGATGATGAGGAGGATGGTTTTAGGAGCAATGCTTTGGGTTTGTCTAAGGAGGGGCCGGTGACGAGGACAGGGTTGT CAGGGATTAGGATTGTGGAGGAGGAGGATACTGGTCCGTCACGGAGACCTTTAAAGAGAATGAGCTCGCCAGAGAAGTGGGAAGCAAAACAGTTGATTGC TTCGGGGGTTTTGAGTGTGCAAGAGTACCCCATGTATGATGAGGAAATAGATGGGTTGCTTTATCAAGAAGAGGGAGTTGAGGAAGAGCTTGAGATTGAG ATGAATGAGGATGAGCCTGCATTTTTGCAAGGGCAGACTAGGTATTCTGTTGATATGTCACCAGTTAAGATTTTTAAGAATCCTGAAGGTTCGTTGAGTC GTGCAGCTGCTCTTCAGTCTGCACTTATAAAGGAGAGGAGAGAAGTGAGGGAGCAGCAGCAGAGGACTATGCTTGATTCAATACCAAAGGATCTTAATCG TCCTTGGGAAGACCCAATGCCCGAGACTGGCGAGAGGCATCTTGCCCAGGAGCTGCGTGGTGTTGGCTTATCTGCTTATGACATGCCTGAATGGAAGAAG GATGCATTTGGGAAAGCACTGACATATGGGCAGCGATCCAAGTTATCTATCCAGGAACAGAGGCAGAGCTTGCCAATTTACAAATTGAAAAAAGAGTTAA TTCAGGCTGTCCATGACAATCAGGTTCTGGTGGTTATTGGTGAGACAGGTTCAGGTAAGACTACTCAGGTGACACAGTATCTTGCTGAGGCAGGTTATAC CACTAGGGGTAAGATTGGATGTACTCAGCCTCGTAGGGTGGCTGCTATGTCTGTAGCCAAGAGGGTGGCTGAAGAGTTTGGCTGTCGTTTAGGTGAGGAA GTTGGCTATGCTATTCGTTTTGAGGATTGCACTGGACCAGATACTGTGATCAAGTATATGACAGATGGTATGCTGCTTAGGGAGATTCTGATTGATGAGA ACCTTTCTCAGTACTCGGTGATAATGCTAGATGAAGCTCATGAGAGGACCATTCACACTGATGTCCTTTTCGGGTTGCTCAAGAAACTTGTGAAGAGAAG ACCTGATCTTCGCTTGATTGTCACATCAGCCACACTGGATGCGGAGAAATTTTCAGGGTATTTCTTCAACTGTAACATATTCACGATTCCTGGGAGAACA TTTCCTGTGGAGATATTGTACACCAAACAGCCAGAAAGTGACTACTTAGATGCATCTCTGATTACTGTCTTGCAAATCCACTTGACAGAACCTGAAGGTG ACATACTTCTATTCTTGACAGGCCAGGAGGAGATTGATTTTGCATGTCAATCTCTTTATGAGAGGATGAAAGGATTAGGAAAAAATGTTCCTGAATTGAT CATTTTGCCTGTTTATAGTGCTCTTCCTAGTGAAATGCAGTCAAGAATCTTTGATCCTGCCCCACCTGGAAAGAGGAAGGTGGTTGTGGCAACTAATATT GCCGAAGCCTCTTTGACAATTGATGGAATTTTTTATGTTATTGATCCTGGGTTTGCCAAGCAGAACGTGTATAATCCAAAGCAAGGGCTTGATTCTCTAG TTATAACGCCAATTTCACAAGCATCTGCCAAGCAACGAGCTGGACGTGCTGGGCGTACTGGGCCTGGAAAATGTTATCGTCTCTACACAGAAAGTGCATA CCGCAATGAGATGTCTCCCACCTCAATTCCAGAAATCCAAAGAATTAATCTTGGATTCACTACGCTTACAATGAAGGCTATGGGAATTAATGACCTATTG TCTTTTGATTTTATGGATCCACCTTCACCGCAGGCCCTGATTTCTGCCATGGAACAGCTATACAGCCTTGGAGCTCTGGATGAGGAAGGACTTCTTACCA AACTAGGGAGGAAAATGGCAGAATTTCCTCTGGATCCACCATTGTCTAAAATGTTGCTGGCTAGTGTAGACCTCGGGTGCAGTGATGAGATTTTGACTAT GATTGCCATGATCCAAACTGGTAACATCTTTTACAGACCTAGAGAAAAACAAGCTCAGGCTGATCAGAAGAGGGCCAAGTTTTTCCAGCCTGAGGGAGAC CATCTGACTTTGCTTGCTGTGTACGAGGCTTGGAAAGCCAAGAACTTTTCAGGACCTTGGTGTTTTGAGAACTTTGTCCAATCCCGATCCTTGAGGAGAG CACAGGATGTCAGAAAACAGCTTCTAAGCATCATGGACAAGTATAAACTAGATGTTGTTAGTGCTGGGAAGAATTTTACCAAGATAAGGAAAGCGATTAC AGCTGGATTCTTTTTCCATGCAGCTAGAAAGGACCCACAGGAGGGTTATCGGACTTTGGTTGAGAACCAGCCAGTTTATATCCACCCCAGCAGTGCTCTT TTCCAGAGACAACCAGACTGGGTCATCTACCATGAGCTGGTAATGACTACAAAAGAGTATATGCGTGAGGTCACGGTTATAGATCCCAAGTGGCTTGTGG AACTAGCTCCCAGGTTCTTTAAAGTATCAGATCCTACAAAAATGAGCAAGCGAAAGCGTCAAGAACGCATTGAACCTCTCTACGATAGATACCACGAACC TAATTCGTGGCGTTTGAGTAAAAGGCGAGCATAA
AA sequence Show only first row Show all	>Potri.015G024400.1 pacid=42774832 polypeptide=Potri.015G024400.1.p locus=Potri.015G024400 ID=Potri.015G024400.1.v4.1 annot-version=v4.1 MATAAENDAGLKKLEYLSLVSKVCSELETHLGFGDKILAEFITELGRSCETVDEFDAKLKENGAEMPDYFVRTLLTIIHAILPPKAEKEGKKDKENDGSG KDSKFKALSIKDSRDRVKEIDRELEIEAEEKSRRENEDRHRERDNDDRHIERDRRGRDRDRERDRDRDTDRERERDMYDRDDRRRDRGRRRDGHDIEDGE GERERRNGKHGYGGGNSNEPELYGVYKGRVSRVMDTGCFVELSDFKGKEGLVHVSQIATRRVGNAKDVVKRDQEVYVKVISVSGNKLSLSMRDVDQNSGK DLLPLKKRDDEEDGFRSNALGLSKEGPVTRTGLSGIRIVEEEDTGPSRRPLKRMSSPEKWEAKQLIASGVLSVQEYPMYDEEIDGLLYQEEGVEEELEIE MNEDEPAFLQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKK DAFGKALTYGQRSKLSIQEQRQSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEE VGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRT FPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNI AEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFTTLTMKAMGINDLL SFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGD HLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAITAGFFFHAARKDPQEGYRTLVENQPVYIHPSSAL FQRQPDWVIYHELVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.015G024400 [exp]	0	1
AT1G17070			GC-rich sequence DNA-binding f...		Potri.013G076000 [exp]	1.00	0.9617
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	2.00	0.9381
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	5.47	0.9030
AT5G41020	MYB		myb family transcription facto...		Potri.015G095000 [exp]	6.24	0.9378
AT5G41020	MYB		myb family transcription facto...		Potri.003G168900 [exp]	6.70	0.9203
AT4G33740			unknown protein		Potri.001G288800 [exp]	8.12	0.9186
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	9.16	0.9173
AT5G48610			unknown protein		Potri.017G058701 [exp]	9.16	0.9336
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.010G087700 [exp]	9.89	0.9047
AT1G56290			CwfJ-like family protein (.1)		Potri.001G415900 [exp]	12.68	0.8950

Compare expression of checked genes

Potri.015G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.