Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 316 / 3e-92 disease resistance family protein / LRR family protein (.1) AT4G04220 254 / 5e-71 AtRLP46 receptor like protein 46 (.1) AT3G05650 234 / 7e-64 AtRLP32 receptor like protein 32 (.1) AT1G74170 232 / 1e-62 AtRLP13 receptor like protein 13 (.1) AT2G33020 229 / 3e-62 AtRLP24 receptor like protein 24 (.1) AT2G33050 224 / 7e-61 AtRLP26 receptor like protein 26 (.1) AT4G13810 221 / 2e-60 AtRLP47 receptor like protein 47 (.1.2) AT2G33060 222 / 4e-60 AtRLP27 receptor like protein 27 (.1) AT4G13920 222 / 8e-60 AtRLP50 receptor like protein 50 (.1) AT2G32680 222 / 9e-60 AtRLP23 receptor like protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G025300 [exp] 1541 / 0 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 1493 / 0 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 1145 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 819 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 790 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 790 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 724 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 724 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 443 / 3e-139 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 493 / 1e-156 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 478 / 4e-151 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 471 / 3e-148 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 459 / 4e-144 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 459 / 1e-143 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 456 / 2e-142 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 450 / 1e-140 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 445 / 6e-139 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 444 / 2e-138 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10039512 [exp] 434 / 8e-135 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G024500.2 pacid=42776131 polypeptide=Potri.015G024500.2.p locus=Potri.015G024500 ID=Potri.015G024500.2.v4.1 annot-version=v4.1 ATGCTGCAGATAAAGCACGACAAGTCGTTTCATCTTCTTTATGTTCTTATTGTGCTTCTGTTGCTCATGAAACTTGCACCTGGGTTCATTTCTGGAGTGA AAGGGGCAACTTTCGGGTGCATAGAGAGGGAGAGACAAGCCCTTCTCAAGTTTAAAGAAGACCTTATTGATGACTTTGGTCTTCTTTCAACTTGGGGAAG TGAAGAAGAGAAGAGGGATTGCTGCAAATGGAGAGGAGTTGGATGCAACAATCGAACTGGTCATGTTACTCATCTTGATCTTCACCGGGAGAATGGCGGC AAGTATTTAACCGGTAAGATCAGTAATTCACTACTTGAGTTGCAGCATTTAAGTTATATGAATATAAGTGGAAGCAATTTTGAAAGGAATTCTTTTCCAT ATTTCATTGGTTCTCTAAAAAAACTAAGATACCTGGATCTCTCCTCCATTGGTGTTGATGGAACTCTTTCAAATCAGCTTTGGAATCTTTCAAGATTACA GTATCTTGATCTTAGTAATAATTATTATGTTAATTTTAAAAGTCTTGACTTCCTATCTAACCTTTTTTATCTTGAGTATCTTCACCTGAGTGGAATCAAC CTCAGTCAAGCTGTTGACTGGATACAATCAGTTAACAAGCTTCCACTTTTAAAAGTCTTACGGTTAAGTAGTTGTGATCTTTCAAAAAGCAGCCCTCCCT CACTTTCTTTTACAAATTCTTCTAAATCCCTAGCTGTCATTGATCTCTCTTCAAACAATCTTGCTTCTTCAACATTCAATTGGTTGTCCAACTTTAGTAA CAGCCTTGTTGATCTTGATATTAGTTCTACCGGGATTATCAGTTCTAAAAACCTCAATTGGCTTTCCTATTTTTCTTCTCTTGAATATCTTGACCTGAGT GGCAATAATCTTAGTCAGATCATTGACTGGCCGCAGGTGATTTACAATCTCCCTCGCTTACATGAATTGGGGTTTAGTTCTTGTAGTCTTTCAATTATCG GTCCTCCATCTCCTTCTCTTGTAAACTCCTCTGAATCTCTTGTTGTCGTTGATTTCTCTGCAAACCAGCTTACATCTTCAATATTTTATTGGTTGGCCAA CTTCAGTAACAACCTCGTTGATCTTGACCTCTCGTATAACCAATTACAAGGTTCAATTCCAGATGCTTTCACAAACTTGACTTCTCTTAGGACTCTTGAT CTATCCTATAACCAATTACAAGGTTCAATTCGAGATGCTTTCACAAACAGGACTTCTCTTAGGACTCTTGATCTATCCTCTAACCAATTACAAGGGGATT TGAGTTCATTTGGGCAGATGTGCAATTTAAATGAACTGTATGCAAGTGGAAATAATCTCACTGGAGAGCTGTCTCAGCTGTTTCAAGACTTTCATGGATG TGTGGAGAGCTCACTAGAGATTCTGCAACTAGGCGGAAATCAGCTTCAAGGTTCACTGCCAGACATCACAAGATTCACTTCCATGAGAGTGCTGGATCTC TCTCAGAATCAACTGAATGGATCTTTACCAAAACGATTTAGTCAACGTTCTGAACTTGTTTCCTTGCACTTGAATGACAACCAACTCACTGGATCACTTA CGGATGTTACGATGCTTTCATCATTAAGAGAGTTGTGGATCGATAACAATCGCTTAGATGGGAATGTTTCTGAAAGTATTGGAAGCCTATCTCAGCTCGA GGAATTGCATGTTGGAGGGAATTCCCTACAAGGTGTGATGTCTGAAGCTCACTTTTCAAATCTCTCCAAATTAACGGTATTGGATTTAACTGATAACTCC CTAGCTTTGAAATTTGAGTCTAACTGGGCTCCTTCTTTTCAATTGGTTCACATATTTCTTTCGTCTTGTGATCTGGGTCCTCATTTCCCTCAATGGCTTC GAAATCAAAATAATTTCATGGAGCTAGATATTTCTGGTTCTGGAATTTCAGATACAATCCCTAATTGGTTTTGGAACTTGACCAATTCCAAGTTGGAATA CTTAGACCTTTCTCACAACAAGATGAGTGGAGTTTTGCCAGATTTCTCATCAAAATATTCCAATCTCCAAAACATAGATTTGAGTTTCAACCTGTTTGAG GGTCCATTATCACTTTTTTCATCAGATACCACATCAACCTTGTTTCTCTCTAACAATAAGTTTTCAGGTCCAGCTTCTTTTCCATGTAATATTGGAAGTC GTATCTTGAAGGTCCTTGACCTTTCAAATAACCTGTTGACGGGATGGATTCCTGATTGTTTAAGGAATTTCACAAGTCTAGGTATTCTGAATTTGGCCAG CAACAACTTTTCAGGTAAAATTCCCAGCTCCATGGGATCAATGCTCAATCTTGAAACATTGAGTTTGCATAATAATAGCTTTGTTGGAGAATTACCTTTG TCTTTGAGGAATTGTAGTTCTCTAGTATTTTTAGACCTGAGCTCAAATAAGTTGCGAGGAGAAATACCAGGCTGGATAGGAGAAAGCATGCCATCTCTGG AAGTCCTATCCCTACAATCTAATGGATTCAATGGAAGCATACCGCCAAATCTTTGTCACCTGTCAAATATTCTGATCTTGGACCTATCTCTAAACAATAT CTCGGGAATCATTCCAAAGTGCCTTGATAATTTCACTTCCATGGTTCAAAAAACAGAGTCAGAACATTTCCTTTCGAATAATGCTGTTCTTACTAGGTAT TACAGTGGACCAGGTATCTATGGTACATATCAGAATAAGATGAGGGTTGGATGGAAAGGAAGAGAGGATGATTATGGAAACACACTAGGACTTTTGAGGA TCATTAATTTTGCAAGAAATAAATTAATAGGTGAAATTCCAGAAGAAATAACAGGACTCTTACTGTTGGTTGCACTGAACTTGTCGGGAAATAATTTGAC TGGAGAAATCCCTCAAAAGATTGGGCAGTTGAAACAGTTGGAATCACTTGATTTGTCAGGAAACCAATTATCAGGAGTAATTCCTATCACAATGGCTGAT CTAAATTTTCTGGCTTTCTTGAACCTCTCCAACAATCACTTGTCGGGGAGGATTCCGTCAAGCACTCAGCTGCAAGGCTTTAATGCTTCACAATTTACCG GTAACCTTGCATTGTGCGGGCAGCCACTCTTACAGAAATGCCCTGGAGATGAGACGAATCAAAGTCCACCTGCTAATGATGACAACCAAGGCAAAGAAGT CGTCGCTGATGAATTCATGAAATGGTTTTGTACTGCTATGGGAATTGGTTTTAGTGTATTCTTTTGGGGAGTTTCAGGTGCTTTACTGCTAAAACGTTCC TGGAGACATGCCTATTTCCTGTTCTTGGATGAATCATGGGACTGGCTCTATGTGAAGGTAGCAGTGTGCAAGGCACGACTTCAACGAGAATTTCAGAGGC TGCACGAGCACGTTCTTGCTTAG
AA sequence Show only first row Show all	>Potri.015G024500.2 pacid=42776131 polypeptide=Potri.015G024500.2.p locus=Potri.015G024500 ID=Potri.015G024500.2.v4.1 annot-version=v4.1 MLQIKHDKSFHLLYVLIVLLLLMKLAPGFISGVKGATFGCIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCNNRTGHVTHLDLHRENGG KYLTGKISNSLLELQHLSYMNISGSNFERNSFPYFIGSLKKLRYLDLSSIGVDGTLSNQLWNLSRLQYLDLSNNYYVNFKSLDFLSNLFYLEYLHLSGIN LSQAVDWIQSVNKLPLLKVLRLSSCDLSKSSPPSLSFTNSSKSLAVIDLSSNNLASSTFNWLSNFSNSLVDLDISSTGIISSKNLNWLSYFSSLEYLDLS GNNLSQIIDWPQVIYNLPRLHELGFSSCSLSIIGPPSPSLVNSSESLVVVDFSANQLTSSIFYWLANFSNNLVDLDLSYNQLQGSIPDAFTNLTSLRTLD LSYNQLQGSIRDAFTNRTSLRTLDLSSNQLQGDLSSFGQMCNLNELYASGNNLTGELSQLFQDFHGCVESSLEILQLGGNQLQGSLPDITRFTSMRVLDL SQNQLNGSLPKRFSQRSELVSLHLNDNQLTGSLTDVTMLSSLRELWIDNNRLDGNVSESIGSLSQLEELHVGGNSLQGVMSEAHFSNLSKLTVLDLTDNS LALKFESNWAPSFQLVHIFLSSCDLGPHFPQWLRNQNNFMELDISGSGISDTIPNWFWNLTNSKLEYLDLSHNKMSGVLPDFSSKYSNLQNIDLSFNLFE GPLSLFSSDTTSTLFLSNNKFSGPASFPCNIGSRILKVLDLSNNLLTGWIPDCLRNFTSLGILNLASNNFSGKIPSSMGSMLNLETLSLHNNSFVGELPL SLRNCSSLVFLDLSSNKLRGEIPGWIGESMPSLEVLSLQSNGFNGSIPPNLCHLSNILILDLSLNNISGIIPKCLDNFTSMVQKTESEHFLSNNAVLTRY YSGPGIYGTYQNKMRVGWKGREDDYGNTLGLLRIINFARNKLIGEIPEEITGLLLLVALNLSGNNLTGEIPQKIGQLKQLESLDLSGNQLSGVIPITMAD LNFLAFLNLSNNHLSGRIPSSTQLQGFNASQFTGNLALCGQPLLQKCPGDETNQSPPANDDNQGKEVVADEFMKWFCTAMGIGFSVFFWGVSGALLLKRS WRHAYFLFLDESWDWLYVKVAVCKARLQREFQRLHEHVLA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.015G024500 [exp]	0	1
					Potri.011G062401 [exp]	2.64	0.9135
AT5G47400			unknown protein		Potri.001G155800 [exp]	4.35	0.8576
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.008G211100 [exp]	4.69	0.8731	PLDP1.1
					Potri.011G073666 [exp]	5.19	0.9061
AT1G79060			unknown protein		Potri.007G065200 [exp]	5.65	0.9007
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	5.83	0.9098
AT5G08560			transducin family protein / WD...		Potri.008G002700 [exp]	6.48	0.8553
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	7.74	0.8707
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	10.95	0.8771
AT1G05120			Helicase protein with RING/U-b...		Potri.014G154600 [exp]	14.49	0.8329

Compare expression of checked genes

Potri.015G024500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.