Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 298 / 3e-86 disease resistance family protein / LRR family protein (.1) AT4G04220 246 / 2e-68 AtRLP46 receptor like protein 46 (.1) AT3G05660 243 / 6e-67 AtRLP33 receptor like protein 33 (.1) AT3G05650 236 / 1e-64 AtRLP32 receptor like protein 32 (.1) AT2G33020 228 / 4e-62 AtRLP24 receptor like protein 24 (.1) AT2G15080 226 / 4e-61 AtRLP19 receptor like protein 19 (.1.2) AT2G33060 221 / 4e-60 AtRLP27 receptor like protein 27 (.1) AT5G27060 221 / 2e-59 AtRLP53 receptor like protein 53 (.1) AT4G13920 219 / 7e-59 AtRLP50 receptor like protein 50 (.1) AT1G07390 220 / 8e-59 AtRLP1 receptor like protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024500 [exp] 1513 / 0 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 1446 / 0 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 1024 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 770 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 747 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 580 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 580 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 575 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 439 / 9e-137 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 492 / 9e-157 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 474 / 3e-150 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 471 / 5e-149 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 471 / 7e-149 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 468 / 6e-148 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 460 / 2e-144 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 456 / 9e-143 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 453 / 3e-142 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 451 / 1e-141 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 451 / 2e-141 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G024800.1 pacid=42775190 polypeptide=Potri.015G024800.1.p locus=Potri.015G024800 ID=Potri.015G024800.1.v4.1 annot-version=v4.1 ATGCTGCCGATAAAGCACGACAAGTCGTTTCATCATCTTTATGTGCTTATTGTGCTTCTGTTGCTCATGAAACTTGCACCTGGGTTCATTTCTGGAGTGA AAGGGGCAACTTTCGGGTGCATAGAGAGGGAGAGACAAGCCCTTCTCAAGTTTAAAGAAGACCTTATTGATGACTTTGGTCTTCTTTCAACCTGGGGAAG TGAAGAAGAGAAGAGGGATTGCTGCAAATGGAGGGGAGTTGGATGCAACAATCGAACTGGTCATGTTACTCATCTCGATCTTCACTGGGAGAAAAGCGGC AAGTATTTAACTGGTAAGATCAGTAATTCATTACTGGAGTTGCAGCATTTGAGTTACATGAGTTTAAGAGGAAGCTATTTTCGGTATCCAAGTCTCGTGA ATCCTGGAAGCGATTTTCAAGGGAGTTCGTTTGAAGGGATTCCTTTTCCATATTTTATTGGGTCTCTAGAAAGTCTAAGATATCTTGATCTCTCTTCTAT GAATATTATGGGTACTCTCTCAAATCAGTTTTGGAATCTCTCAAGATTACAGTATCTTAATCTTAGTGATAATTATAATATTAATTTTAAAAGTCTTGAC TTTCTCAATAATTTATTTTTTCTTGAATATCTTGACATAAGTAGAAACAATCTCAATCAAGCTATTGATTGGATGGAAATGGTTAACAAGGTCCCTTTTT TAAAAGTCTTACAGTTAAGTGGATGTCAACTTTCAAATATCAATCCTCCCTCTCTTTTTTTTATGAATTCTTCTAAATTCCTAGCTGTCATTGATCTCTC TAATAACTATCTTGTTTCTTCAACATTCAATTGGTTATCCAACTTTAGTAACAGCCTTGTTGATCTGGATGTTAGTGGGAATTGGGATAACAGTTCTAAA AACCTCGATTGGCTTTCCTATCTTTTTTCTTTAGAGCATCTTGACCTGAGTCGCAATAAGAACCTTAGTATTGACTGGCTGCAATTGCCTAACAGGCTCC CTCGCTTACATGAATTCCTTGTTGATCTTGACCTCTCATTTAACCATTTACAAGGTTCAATTCCAGATGCTTTCACAAACATGACTTCTCTTAGGACTCT TGATCTATCCTGTAACCAATTACAGGGCTCAAATCCAGAAGCTTTCGCAAACATGATTTCTCTTAGGACTCTTCATCTATCCTCTAACCAATTACAAGGC GATTTGAGTTCATTTGGGCAGATGTGCAGTTTAAATAAACTGTATATAAGCGAAAACAGTCTCACTGGAGAGCTGTCTCGGTTGTTTCAAGACTTGCATG GATGCGTGGAGAACTCACTAGAGATTCTACAACTAGACGAAAATCAGCTTCATGGTTCAGTGCCCGACATCACAAGATTCACTTCCATGAGAGAGCTGGT TCTCTCTCGGAATCAACTGAATGGATCTTTACCGAAACGATTTAGTCAACGTTCTAAACTTGTTTTGTTGTACTTGGATGACAACCAACTCACTGGATCA GTTACGGATGTTACGATGCTTTCATCATTGAGAGAGTTGGTGATTGCTAACAATCGCTTAGATGGGAATGTTTCTGAAAGTATTGGAGGCCTATCTCAGC TCGAGAAATTGGATGCTGGAAGGAATTCCCTACAAGGTGTGATGTCTGAAGCTCACTTTTCAAATCTCTCCAAATTAACAGTATTGGATTTAACTGATAA TTCCTTAGCTTTGAAATTTGAGTCTAATTGGGCTCCCACTTTTCAATTAGATGACATATTTCTTTCGTCTTGTAATTTGGGTCCTCCTTTCCCTCAATGG CTGCGAAATCAAAATAATTTCATAAAGCTAGATATCTCTGGTTCTGGAATTTCAGATACAATCCCAAATTGGTTTTGGAACTTGTCTAATTCCAAGTTGC AACTCTTAAACCTTTCTCACAACAGGATGTGTGGAATTTTGCCAGATTTCTCATCAAAATATTCCAATCTCCTACACATAGATTTGAGTTTCAACCAGTT TGAGGGTCGATTACCACTTTTTTCATCAGATACCACATCAACCTTGTTTCTCTCTAACAATAAGTTTTCAGGTCCAGCTTCTTGTCCATGTAATATTGGA AGTGGTATCTTGAAGGTCCTTGACCTCTCAAATAACCTGTTGAGGGGATGGATTCCTGATTGTTTAATGAATTTCACAAGTCTAAGTGTTCTGAATTTGG CTAGCAACAACTTTTCAGGTAAAATTCTCAGCTCCATTGGATCAATGGTCTATCTTAAAACATTGAGTTTGCATAATAATAGCTTTGTTGGAGAATTACC TTTGTCTTTGAGGAATTGTAGTTCTCTAGCATTTTTAGACCTGAGCTCAAATAAGTTGCGAGGAGAAATTCCAGGCTGGATAGGAGAAAGCATGCCATCT CTGAAAGTCCTTTCCCTACGATCTAATGGATTCAATGGAAGCATACTGCCAAATCTTTGTCACCTATCAAATATTCTGATCTTGGACCTATCTCTAAACA ATATCACAGGAATCATTCCAAAGTGCCTTAATAACCTCACTTCCATGGTTCAAAAAACAGAGTCAGAATATTCCCTTGCGAATAATGCTGTTCTTAGTCC GTATTTCACATCAGATAGCTATGATGCATATCAGAATAAGATGAGGGTTGGATGGAAAGGAAGAGAGGATGGTTACGAAAGCACACTAGGACTTTTGAGG ATCATTAATCTTGCAAGAAATAAACTAATTGGAGAAATTCCAGAAGAGATAACAGGACTCTTACTGTTGCTTGCACTGAATTTATCCGGAAATACTTTGA GTGGAGAAATCCCTCAAAAGATTGGGCAGTTGAAACAGTTGGAATCGCTTGATTTGTCAGGAAACCAATTATCAGGAGTAATTCCTATCACAATGGCTGA TCTAAATTTTCTGGCTTTCTTGAACCTCTCCAACAATCACTTGTCGGGGAGGATTCCGTCAAGCACTCAGCTGCAAGGCTTTAATGCTTCACAATTTACC GGTAACCTTGCATTGTGCGGGAAGCCACTCTTACAGAAATGCCCTCGAGATGAGACGAACCAAAGTCCACCTCCTAATGATGACAACCGAGGCAAAGAAG TCGTTGCTGATGAATTCATGAAATGGTTTTGTACTGCTATGGGAATTGGTTTTAGTGTATTCTTTTGGGGAGTTTCAGGTGCTTTACTGCTAAAACTTTC CTGGAGACATGCCTATTTTGTTAGGATATTGCCATTTGTGGCAATACCCCACCACTAA
AA sequence Show only first row Show all	>Potri.015G024800.1 pacid=42775190 polypeptide=Potri.015G024800.1.p locus=Potri.015G024800 ID=Potri.015G024800.1.v4.1 annot-version=v4.1 MLPIKHDKSFHHLYVLIVLLLLMKLAPGFISGVKGATFGCIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCNNRTGHVTHLDLHWEKSG KYLTGKISNSLLELQHLSYMSLRGSYFRYPSLVNPGSDFQGSSFEGIPFPYFIGSLESLRYLDLSSMNIMGTLSNQFWNLSRLQYLNLSDNYNINFKSLD FLNNLFFLEYLDISRNNLNQAIDWMEMVNKVPFLKVLQLSGCQLSNINPPSLFFMNSSKFLAVIDLSNNYLVSSTFNWLSNFSNSLVDLDVSGNWDNSSK NLDWLSYLFSLEHLDLSRNKNLSIDWLQLPNRLPRLHEFLVDLDLSFNHLQGSIPDAFTNMTSLRTLDLSCNQLQGSNPEAFANMISLRTLHLSSNQLQG DLSSFGQMCSLNKLYISENSLTGELSRLFQDLHGCVENSLEILQLDENQLHGSVPDITRFTSMRELVLSRNQLNGSLPKRFSQRSKLVLLYLDDNQLTGS VTDVTMLSSLRELVIANNRLDGNVSESIGGLSQLEKLDAGRNSLQGVMSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDDIFLSSCNLGPPFPQW LRNQNNFIKLDISGSGISDTIPNWFWNLSNSKLQLLNLSHNRMCGILPDFSSKYSNLLHIDLSFNQFEGRLPLFSSDTTSTLFLSNNKFSGPASCPCNIG SGILKVLDLSNNLLRGWIPDCLMNFTSLSVLNLASNNFSGKILSSIGSMVYLKTLSLHNNSFVGELPLSLRNCSSLAFLDLSSNKLRGEIPGWIGESMPS LKVLSLRSNGFNGSILPNLCHLSNILILDLSLNNITGIIPKCLNNLTSMVQKTESEYSLANNAVLSPYFTSDSYDAYQNKMRVGWKGREDGYESTLGLLR IINLARNKLIGEIPEEITGLLLLLALNLSGNTLSGEIPQKIGQLKQLESLDLSGNQLSGVIPITMADLNFLAFLNLSNNHLSGRIPSSTQLQGFNASQFT GNLALCGKPLLQKCPRDETNQSPPPNDDNRGKEVVADEFMKWFCTAMGIGFSVFFWGVSGALLLKLSWRHAYFVRILPFVAIPHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.015G024800 [exp]	0	1
AT2G23780			RING/U-box superfamily protein...		Potri.007G031600 [exp]	1.73	0.7427
AT1G15780			unknown protein		Potri.003G025500 [exp]	2.00	0.7615
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.005G092800 [exp]	11.40	0.6757
AT5G52300		LTI65, RD29B	RESPONSIVE TO DESSICATION 29B,...		Potri.015G143950 [exp]	15.49	0.7035
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G013200 [exp]	24.37	0.6914
AT2G32970			unknown protein		Potri.002G224900 [exp]	32.72	0.6975
AT3G61960			Protein kinase superfamily pro...		Potri.002G181000 [exp]	45.82	0.6085
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.006G078101 [exp]	48.88	0.7162
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247300 [exp]	56.91	0.6871
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.015G136300 [exp]	57.75	0.6335

Compare expression of checked genes

Potri.015G024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.