Plant FIBer expression Database

Potri.015G024900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G034300
[exp]
253 / 8e-78 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G024900.1 pacid=42775391 polypeptide=Potri.015G024900.1.p locus=Potri.015G024900 ID=Potri.015G024900.1.v4.1 annot-version=v4.1
ATGGTTGTTTATGAATGTTTGTTCCTGGAAGTGTCAGTGTTATTGTTTGTTGTTTTCGGAATAAATTGTTGGTGCTTGAATGGATCGCGGCTCTTAGAAG
CTGGAACATTGGATACCTCGAATGGATACTGTGGGCAAAAGTTTATGTCAGTAGAATTTTTTGACAAAAGCCAGCCTATTAGATATGCTTATGGTGAGCC
AAAGGTGATGCCTGGAGTGCCTCCTGAAGGCAATATTACAAAGGAAGCACGTGCTGCTGATTATGATATCGTGGAAGTTGCAAATGAAAGGATCACGCAC
CCAATTTCTGATCTAGCAGCACAGGCTGGAAGGAAAAGACGAGTTGACAACTCATCTGTGGATAATTCTGTTGATTCTCAACCAGGGAAAAGTCAGAGCA
ATAGGAAAAGGAGGCAAGAAGAAATTGCCGGTGCAAATTTATCTGAAGATGCTATTAACAATAGTATAACTTGGACCCGGGATGCTGTTTGTAAGGATCA
GGATGCAGCTGAAGATGCAGATGTACTTATAATAGACAAAATCATTGAAGTTTCTGAAGTGACTTGTGAAATAACTGATGGCGCTTTTGCTAATCAAGAA
AAACCAACGCCCCTTCAAAATTCAGAAAAGACATCCAACCCCAATACTGGTACAGGCAGGCAGGTTTCGGAAGTGTTAAAGGAGCATTGTGGGGGAAATG
GTGGAAATGGCTCCAAGTAA
AA sequence
>Potri.015G024900.1 pacid=42775391 polypeptide=Potri.015G024900.1.p locus=Potri.015G024900 ID=Potri.015G024900.1.v4.1 annot-version=v4.1
MVVYECLFLEVSVLLFVVFGINCWCLNGSRLLEAGTLDTSNGYCGQKFMSVEFFDKSQPIRYAYGEPKVMPGVPPEGNITKEARAADYDIVEVANERITH
PISDLAAQAGRKRRVDNSSVDNSVDSQPGKSQSNRKRRQEEIAGANLSEDAINNSITWTRDAVCKDQDAAEDADVLIIDKIIEVSEVTCEITDGAFANQE
KPTPLQNSEKTSNPNTGTGRQVSEVLKEHCGGNGGNGSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G024900
[exp]
0 1
AT4G16340 SPK1 SPIKE1, guanyl-nucleotide exch... Potri.004G000750
[exp]
7.74 0.9030
AT1G07930 GTP binding Elongation factor ... Potri.016G086450
[exp]
8.00 0.8934
AT3G27160 GHS1 GLUCOSE HYPERSENSITIVE 1, Ribo... Potri.012G092700
[exp]
8.83 0.8672 GHS1.2
Potri.006G062150
[exp]
11.22 0.9026
AT1G13740 AFP2 ABI five binding protein 2 (.1... Potri.004G120600
[exp]
12.00 0.8787
AT3G07440 unknown protein Potri.007G083100
[exp]
12.24 0.8634
AT2G38910 CPK20 calcium-dependent protein kina... Potri.006G199400
[exp]
14.42 0.8833 CPK20.1
AT1G21280 unknown protein Potri.004G133001
[exp]
18.70 0.8878
AT1G50430 ST7R, PA, LE, 7... PARVA, LEPIDA, DWARF 5, DELTA5... Potri.008G005200
[exp]
19.51 0.8275 DWF5.3
AT2G37980 O-fucosyltransferase family pr... Potri.006G095300
[exp]
24.00 0.8853

Potri.015G024900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.