Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 362 / 1e-109 disease resistance family protein / LRR family protein (.1) AT4G04220 244 / 6e-68 AtRLP46 receptor like protein 46 (.1) AT2G33020 243 / 2e-67 AtRLP24 receptor like protein 24 (.1) AT2G33060 236 / 3e-65 AtRLP27 receptor like protein 27 (.1) AT1G45616 238 / 6e-65 AtRLP6 receptor like protein 6 (.1) AT5G27060 234 / 7e-64 AtRLP53 receptor like protein 53 (.1) AT3G25010 233 / 9e-64 AtRLP41 receptor like protein 41 (.1) AT2G32680 231 / 3e-63 AtRLP23 receptor like protein 23 (.1) AT3G05650 226 / 1e-61 AtRLP32 receptor like protein 32 (.1) AT4G13810 224 / 1e-61 AtRLP47 receptor like protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024800 [exp] 1268 / 0 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 1211 / 0 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 1142 / 0 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 924 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 874 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 874 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 800 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 796 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 531 / 1e-172 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016341 [exp] 471 / 2e-149 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 454 / 3e-143 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 447 / 2e-140 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 435 / 6e-136 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 429 / 1e-133 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 429 / 2e-133 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 421 / 1e-130 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 417 / 1e-128 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 407 / 1e-125 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 407 / 1e-125 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G025100.2 pacid=42775191 polypeptide=Potri.015G025100.2.p locus=Potri.015G025100 ID=Potri.015G025100.2.v4.1 annot-version=v4.1 ATGCTGCTGATAAAGCACGACAAGTCGTTTCACAATCTTTATGTGCTTATTGTGCTTCTGTTGCTCATGAAACTTGCTCCTGGGTTCATTTCTGGAGTGA AAGGGGCAACTTTCGGGTGCATAGAGAGGGAGAGACAAGCCCTTCTCAAGTTTAAAGAAGACCTTATTGATGACTTTGGTCTTCTTTCAACTTGGGGAAG TGAAGAAGAGAAGAGGGATTGCTGCAAATGGAGAGGAGTTGGATGTAGCAATCGAACCGGTCATGTTACTCATCTCGATCTTCACCGGGAGAATTACAAC GGATATTACTACCAATTAAGTGGTAATATCAGCAATTCACTACTTGAGTTGCAGCATTTGAGTTACCTGAATCTAAATGGAAGCCGTTTTGGAGGGAGTT CTTTTCCATATTTCATTGGGTCCCTAAAAAAATTAAGATACCTGGATCTTTCTTCTATTCATGTTGATGGAACTCTTTCAAATCAGTTTTGGAACCTTTC AAGATTACAATATCTAGATCTCAGTTATATTCAGGGTGTTAATTTTACAAGTCTTGACTTCCTTTCCAACTTTTTTTCTCTTCAACATCTTGACCTGAGA GGCAATGATCTTAGTGAGACGATTGACTGGCTGCAAGTGCTTAACAGGCTCCCTCGCTTACATGAATTGTTGTTAAGTTCTTGTAGCCTTTCAATTATCG GTTCTCCATCTCTTTCTCTTGTAAACTCCTCTGAATCTCTTGCTATCGTTGATTTCTCTTTCAACGATCTTTCCTCTTCAATATTCCATTGGTTGGCCAA CTTCGGTAACAGCCTTATTGATCTTGACCTCTCACATAACAATTTACAAGGTTCAATTCCAGATGTTTTCACGAACATGACCTCTCTTAGGACCCTTGAT CTATCCTCTAACCAATTACAAGGCGATTTGAGTTCATTTGGGCAGATGTGCAGTTTAAATAAGCTGTGTATAAGCGAAAACAATCTCATTGGAGAGCTGT CTCAGTTGTTTGGATGCGTGGAGAACTCATTAGAGATTCTACAACTAGACAGAAATCAGCTTTATGGTTCATTGCCTGACATCACAAGATTCACTTCCAT GAGAGAGCTGAATCTCTCTGGGAATCAACTGAATGGATCTTTACCAGAACGATTTAGTCAACGTTCTGAACTTGTTTTGTTGTACTTGAATGACAACCAA CTCACTGGATCACTTACGGATGTTGCGATGCTTTCATCATTGAGAGAGTTGGGGATCAGTAACAATCGATTAGATGGGAATGTTTCTGAAAGTATTGGAA GCCTATTTCAGCTCGAGAAATTGCATGTTGGAGGGAATTCCCTACAAGGTGTGATGTCTGAAGCTCACTTTTCAAATCTCTCCAAATTAACGGTATTGGA TTTAACCGATAACTCCCTAGCTTTGAAATTTGAGTCTAACTGGGCTCCCACTTTTCAGTTGGATCGCATATTTCTTTCGTCTTGTGATTTGGGTCCTCCT TTCCCTCAATGGCTTCGAAATCAAACTAATTTCATGGAGCTAGATATCTCTGGTTCTAGAATTTCAGATACAATCCCTAATTGGTTTTGGAACTTGTCCA ATTCCAAGTTGGAATTGTTAGACCTTTCTCACAACAAGATGAGTGGATTATTGCCAGATTTCTCATCAAAATATGCCAATCTCCGCAGCATAGATTTGAG TTTCAACCAGTTTGAGGGTCCATTACCGCATTTTTCATCAGATACCACATCAACCTTGTTTCTCTCTAACAATAAGTTTTCAGCTTCTTTTCGATGTGAT ATTGGAAGTGATATCTTGAGGGTCCTTGACCTCTCAAATAACCTGTTGACTGGATCGATTCCTGATTGTTTAAGAGGTCTAGTTGTTCTGAATTTGGCCA GCAACAACTTTTCAGGTAAAATTCCCAGCTCCATTGGATCAATGCTCGAACTTCAGACATTGAGTTTGCATAATAATAGCTTTGTTGGAGAATTACCTTT GTCTTTGAGGAGTTGTAGTTCTCTAGTATTTTTAGACCTGAGCTCAAATAAGTTGCGAGGAGAAATACCAGGTTGGATAGGAGAAAGCATGCCATCTCTG AAAGTCCTTTCCCTACAATCTAATGGATTCAGTGGAAGCATACCGCCAAATCTTTGTCACCTATCAAATATTCTGATCTTGGACCTATCTCTAAACAATA TCTCAGGAATCATTCCAAAGTGCCTTAATAACCTCACTTCCATGGTTCAAAAAACAGAGTCAGAATCGAATAATGCTGTTCCTAGTAGGTCTTACGTTTT GGAGAGCCGTTACCCGCCTAACACTAACGGGCGCTCTTACAGGTCTTACAATCTCAGTGAAATTGGCCCTGTAATTGTCTATGTTGAATATATGAATGAG ATCAGGGTTGGATGGAAAGGAAGAGCGGATGTTTATCGAAGCACACTAGGACTTTTGAGGATCCTTGATTTTTCAGGAAATAAATTACAAGGTGAAATTC CAGAAGAAATAACAGGACTCTTACTGTTGGTTGCACTGAATTTATCCGGAAATAATTTGACTGGAGAAATCCCTCAAAAGATTGGGCAGTTGAAACAGTT GGAATCACTTGATTTGTCAGGAAACCAATTATCAGGAGTGATTCCTATCACAATGGCTGATCTAACTTTTCTATCTTACCTGAACCTCTCCAACAATCAC TTGTCGGGGAGGATTCCGTCAAGCACTCAGCTGCAAGGCTTTAATGCTTCACAATTTACCGGTAACCATGCATTGTGCGGGCAGCCACTCTTACAGAAAT GCCCTGGAGATGAGACGAATCAAAGTCCACCTGCTAATGATGACAACCGAGGCAAAGAAGTCGTTGCTGATGAATTCATGAAATGGTTTTGTATTTCTAT GGGAATTGGTTTTAGTGTATTCTTTTGGGGAGTTTCAGGTGCTTTACTGCTAAAACGTTCCTGGAGACATGCCTATTTCCGGTTCTTGGATGAATCATGG GACTGGCTCTATGTGAAGGTAGCAGTGCGCAAGGCACGAATTCAACGAGAATTTCAGAGGCTGCAAGAGCACGTTCTTGCTTAG
AA sequence Show only first row Show all	>Potri.015G025100.2 pacid=42775191 polypeptide=Potri.015G025100.2.p locus=Potri.015G025100 ID=Potri.015G025100.2.v4.1 annot-version=v4.1 MLLIKHDKSFHNLYVLIVLLLLMKLAPGFISGVKGATFGCIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVGCSNRTGHVTHLDLHRENYN GYYYQLSGNISNSLLELQHLSYLNLNGSRFGGSSFPYFIGSLKKLRYLDLSSIHVDGTLSNQFWNLSRLQYLDLSYIQGVNFTSLDFLSNFFSLQHLDLR GNDLSETIDWLQVLNRLPRLHELLLSSCSLSIIGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLIDLDLSHNNLQGSIPDVFTNMTSLRTLD LSSNQLQGDLSSFGQMCSLNKLCISENNLIGELSQLFGCVENSLEILQLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSELVLLYLNDNQ LTGSLTDVAMLSSLRELGISNNRLDGNVSESIGSLFQLEKLHVGGNSLQGVMSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCDLGPP FPQWLRNQTNFMELDISGSRISDTIPNWFWNLSNSKLELLDLSHNKMSGLLPDFSSKYANLRSIDLSFNQFEGPLPHFSSDTTSTLFLSNNKFSASFRCD IGSDILRVLDLSNNLLTGSIPDCLRGLVVLNLASNNFSGKIPSSIGSMLELQTLSLHNNSFVGELPLSLRSCSSLVFLDLSSNKLRGEIPGWIGESMPSL KVLSLQSNGFSGSIPPNLCHLSNILILDLSLNNISGIIPKCLNNLTSMVQKTESESNNAVPSRSYVLESRYPPNTNGRSYRSYNLSEIGPVIVYVEYMNE IRVGWKGRADVYRSTLGLLRILDFSGNKLQGEIPEEITGLLLLVALNLSGNNLTGEIPQKIGQLKQLESLDLSGNQLSGVIPITMADLTFLSYLNLSNNH LSGRIPSSTQLQGFNASQFTGNHALCGQPLLQKCPGDETNQSPPANDDNRGKEVVADEFMKWFCISMGIGFSVFFWGVSGALLLKRSWRHAYFRFLDESW DWLYVKVAVRKARIQREFQRLQEHVLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.015G025100 [exp]	0	1
AT2G17710			unknown protein		Potri.005G107900 [exp]	4.58	0.9439
AT1G01490			Heavy metal transport/detoxifi...		Potri.004G073100 [exp]	5.65	0.9308
AT4G26485			Domain of unknown function (DU...		Potri.011G141501 [exp]	6.08	0.8929
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.019G098600 [exp]	7.14	0.8669
					Potri.001G004900 [exp]	10.53	0.9255
					Potri.002G252050 [exp]	14.28	0.9212
					Potri.008G087651 [exp]	16.24	0.8323
					Potri.019G073801 [exp]	16.49	0.9212
					Potri.014G003683 [exp]	20.19	0.9212
					Potri.018G090350 [exp]	24.39	0.9151

Compare expression of checked genes

Potri.015G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.