Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) AT4G13920 285 / 5e-82 AtRLP50 receptor like protein 50 (.1) AT1G74170 276 / 2e-78 AtRLP13 receptor like protein 13 (.1) AT4G13810 259 / 3e-74 AtRLP47 receptor like protein 47 (.1.2) AT2G33060 260 / 4e-74 AtRLP27 receptor like protein 27 (.1) AT2G32660 254 / 1e-73 AtRLP22 receptor like protein 22 (.1) AT4G13880 253 / 3e-72 AtRLP48 receptor like protein 48 (.1) AT5G27060 256 / 1e-71 AtRLP53 receptor like protein 53 (.1) AT3G05660 254 / 2e-71 AtRLP33 receptor like protein 33 (.1) AT3G05370 250 / 4e-70 AtRLP31 receptor like protein 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024600 [exp] 1719 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 1598 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 1306 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 870 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 853 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 773 / 0 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 769 / 0 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 720 / 0 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 624 / 0 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 499 / 5e-161 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 493 / 1e-158 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 488 / 1e-156 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 482 / 2e-154 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 481 / 5e-154 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 480 / 9e-154 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 476 / 6e-152 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 472 / 6e-151 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 467 / 7e-149 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 462 / 1e-146 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G025200.4 pacid=42775468 polypeptide=Potri.015G025200.4.p locus=Potri.015G025200 ID=Potri.015G025200.4.v4.1 annot-version=v4.1 ATGCCCAAAAACTATGTTTTAATTATTGTGCTTGTATTGTTGCACATCCCTTTTCCTGGATTCATTACAGGGGCAACAGGGGGGGAAATTGGGTGCATTG AGCGGGAGAGACAAGCACTTCTTAAGTTTAAAGAAGATATTATTGATGAAGATGGTGTTCTTTCTTCTTGGGGGGGTGAAGAAGAGAAAAGAGATTGCTG CAAGTGGAGAGGAGTTGGCTGTGACAACATAACTGGTCATGTTACTTCACTTAATCTTCATTCCTCACCTTTGTATGAGCATCATTTTACGCCTCTAACA GGCAAGGTTAGTAATTCATTACTTGAGTTGCAGCATTTGAATTACTTGGACCTGAGTTTGAATAATCTTGATGAGAGTATCATGGATTTCATTGGCTCCC TAAGCAGCCTAAGATACCTGAACCTCTCCTACAACCTTTTCACTGTAACTATCCCATATCACCTCAGGAACCTCTCAAGATTGCAGTCTCTTGATCTCAG CTATAGTTTTGATGCCAGTGTTGAAAATCTTGGCTGGCTTTCTCATCTTTCTTCTTTGGAGCATCTTGATTTGAGTGGTTCCGACCTCAGCAAGGTAAAT GACTGGCTGCAAGTGGTTACCAACCTCCCTCGCCTAAAAGACTTGCGATTAAATCAGTGTAGTCTTACGGATATAATTCCTTCACCTCTTTCTTTCATGA ACTCTTCTAAATTTCTTGCTGTACTCCATCTCTCTAATAACAATCTTTCTTCTGCAATATACCCCTGGCTGTATAACTTAAGTAACAGCCTTGCTGACCT TGACCTTTCTGGTAACCAGTTACAAGGTTTGGTTCCAGATGGCTTCAGAAAGATGAGTGCTCTTACAAATCTTGTTCTATCCCGTAATCAGCTTGAAGGT GGCATTCCAAGATCTCTTGGGGAGATGTGCAGCTTGCATACGCTAGATTTGTGCCACAACAATCTCACCGGGGAGCTTTCTGATCTCACTCGGAACTTAT ATGGACGCACAGAGAGCTCGCTGGAGATTTTAAGATTATGCCAGAATCAGCTCCGTGGTTCATTGACTGATATTGCTAGATTTTCTTCCTTGAGAGAATT AGATATCTCGAATAATCAACTGAATGGGTCTATACCAGAAAGTATTGGATTCCTTTCCAAGCTTGACTATTTCGATGTTTCTTTTAATTCTTTGCAAGGT TTGGTGTCTGGCGGACATTTTTCTAATCTCTCCAAATTAAAGCACTTGGATTTGTCTTATAATTCCTTAGTTTTGAGATTCAAATCCGATTGGGACCCTG CTTTTCAATTGAAAAACATTCATCTTAGTTCATGCCACTTGGGGCCTTGTTTCCCAAAATGGCTGCGAACTCAGATAAAAGTCCGTTTGCTAGATATCTC CAGTGCTAGTATTTCAGATACCGTCCCTAATTGGTTTTGGAACCTACTGCCTAAGTTGGCTTTCTTAAACATATCTCACAACTTGATGAGGGGAACACTG CCAGATTTTTCATCAGTAGATGCAGTTGATGATACATTCCCTGGGTTTGATTTGAGTTTTAATCGGTTTGAGGGTCTACTGCCAGCTTTTCCTTTTAACA CAGCCTCATTGATTCTTTCTAACAATTTGTTTTCAGGGCCAATTTCTCTTATATGCAATATTGTAGGCAAGGCTTTGAGCTTCCTTGATCTGTCAAACAA TCTGTTAACCGGACAACTTCCAAATTGTTTCATGAATTGGAGCACACTCGTTGTTCTGAATTTGGCTAACAACAATTTGTCAGGTGAAATTCCAAGCTCT GTTGGATCATTGTTTTCCCTTCAAACATTGAGTTTAAACAAAAATAGCCTCTATGGAGAATTGCCTATGTCTTTAAAAAACTGTAGCATGTTGAAATTCT TGGACCTTAGTAGAAACCAATTATCCGGAGAAATACCAGCTTGGATAGGAGAAAGCCTCTCATCTTTGATGTTCCTTTCCCTTAAATCTAATGAATTCAT TGGAAGCATCCCACTACATCTTTGTCAGCTAACAAATCTTAGGATCTTGGACCTCTCCCAAAACACCATCTCTGGAGCCATACCAAAGTGTCTCAACAAT CTAACTACTATGGTTCTGAAAGGAGAAGCAGAGACTATCATTGACAATCTTTACTTGACTTCTATGAGATGTGGAGCAATTTTTTCTGGACGCTACTATA TCAATAAGGCATGGGTTGGATGGAAAGGAAGAGATTATGAGTATGAGAGATACCTTGGACTGCTGCGTGTCATTGATTTTGCAGGCAACAATTTATCTGG AGAAATTCCAGAGGAAATAACTGGCCTGCTTGGGTTGGTTGCTCTGAATTTGTCAAGAAATAATTTGACTGGAGTAATCCCCCAAACAATTGGGCTGTTG AAATCGTTAGAATCTCTTGATTTGTCAGGAAATCAGTTCTCTGGTGCAATTCCAGTCACAATGGGCGATCTGAATTTTCTGAGTTACTTGAATGTCTCCT ACAACAACTTGTCTGGGCAAATCCCATCAAGCACTCAGCTTCAGAGCTTTGATGCTTCAGCTTTTATTGGCAATCCTGCTTTGTGTGGTCTACCAGTCAC CAATAAATGCCTTGGAGGTGATTTGCCTCGAAATTTAGTGATGAATGGTGTGATCCAAGACAATCAAGAAACTGTTCATGAGTTCAGTGCATGGTTTTGT ACTGCTATGGGAATTGGTTTTAGTGTATTCTTTTGGGGAGTTTCAGGTGCTTTACTGCTCATACGTTCCTGGAGACATGCCTATTTCCGGTTCTTGGATG AATCATGGGACTGGCTCTATGTGAAGGTAGCAGTGCGCAAGGCACGACTTCAACGAGAATTTCAGAGGCTGCACGAGCACGTTCTTGCTTAG
AA sequence Show only first row Show all	>Potri.015G025200.4 pacid=42775468 polypeptide=Potri.015G025200.4.p locus=Potri.015G025200 ID=Potri.015G025200.4.v4.1 annot-version=v4.1 MPKNYVLIIVLVLLHIPFPGFITGATGGEIGCIERERQALLKFKEDIIDEDGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSSPLYEHHFTPLT GKVSNSLLELQHLNYLDLSLNNLDESIMDFIGSLSSLRYLNLSYNLFTVTIPYHLRNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVN DWLQVVTNLPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNLSSAIYPWLYNLSNSLADLDLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEG GIPRSLGEMCSLHTLDLCHNNLTGELSDLTRNLYGRTESSLEILRLCQNQLRGSLTDIARFSSLRELDISNNQLNGSIPESIGFLSKLDYFDVSFNSLQG LVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSCHLGPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMRGTL PDFSSVDAVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGKALSFLDLSNNLLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSS VGSLFSLQTLSLNKNSLYGELPMSLKNCSMLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDLSQNTISGAIPKCLNN LTTMVLKGEAETIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGRDYEYERYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTIGLL KSLESLDLSGNQFSGAIPVTMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFIGNPALCGLPVTNKCLGGDLPRNLVMNGVIQDNQETVHEFSAWFC TAMGIGFSVFFWGVSGALLLIRSWRHAYFRFLDESWDWLYVKVAVRKARLQREFQRLHEHVLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.015G025200 [exp]	0	1
AT2G34930			disease resistance family prot...		Potri.015G024600 [exp]	1.00	0.9679
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Potri.011G166900 [exp]	2.82	0.7057
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.012G090100 [exp]	4.47	0.7173
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G033900 [exp]	10.95	0.6808
AT2G34930			disease resistance family prot...		Potri.015G025800 [exp]	12.80	0.6177
AT5G24810			ABC1 family protein (.1.2)		Potri.018G004500 [exp]	38.34	0.6737
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.018G149700 [exp]	41.25	0.6441
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	50.84	0.6018
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G009400 [exp]	146.64	0.5843
AT1G71770		PAB5	poly(A)-binding protein 5 (.1)...		Potri.001G038975 [exp]	157.73	0.5520

Compare expression of checked genes

Potri.015G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.