Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 313 / 2e-91 disease resistance family protein / LRR family protein (.1) AT4G20140 245 / 2e-66 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G13920 239 / 1e-65 AtRLP50 receptor like protein 50 (.1) AT3G05650 234 / 4e-64 AtRLP32 receptor like protein 32 (.1) AT2G32680 233 / 1e-63 AtRLP23 receptor like protein 23 (.1) AT5G07280 234 / 4e-63 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G04220 226 / 1e-61 AtRLP46 receptor like protein 46 (.1) AT3G11010 227 / 2e-61 AtRLP34 receptor like protein 34 (.1) AT3G11080 227 / 3e-61 AtRLP35 receptor like protein 35 (.1) AT5G27060 226 / 6e-61 AtRLP53 receptor like protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024500 [exp] 1551 / 0 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 1444 / 0 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 1211 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 811 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 644 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 644 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 577 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 574 / 0 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 470 / 5e-148 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 518 / 2e-166 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 509 / 3e-163 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 501 / 3e-160 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 488 / 3e-155 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 479 / 5e-151 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 474 / 2e-150 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 469 / 3e-148 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10039512 [exp] 455 / 4e-143 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10016337 [exp] 446 / 6e-139 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 445 / 6e-139 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G025300.5 pacid=42776166 polypeptide=Potri.015G025300.5.p locus=Potri.015G025300 ID=Potri.015G025300.5.v4.1 annot-version=v4.1 ATGCTGCTGATAAAGCACGACAGGTCGTTTCATCATCTTTATGTGCTTATTGTGCTTCTGTTGCTCATGAAACTTGCTCCTGGGTTCATTTCTGGAGTGA AAGGGGCAACTTTCGGGTGCATAGAGAGGGAGAGACAAGCCCTTCTCAAGTTTAAAGAAGACCTTATTGATGACTTTGGTCTTCTTTCAACTTGGGGAAG TGAAGAAGAGAAGAGGGATTGCTGCAAATGGAGAGGAGTTCGATGCAACAATCGAACTGGTCATGTTACTCATCTTGATCTTCACCAGGAGAATTACATT AACGGATATTTAACTGGTAAGATCAGTAATTCACTACTTGAGTTACAGCATTTGAGTTACCTGAATCTAAATAGAAACTCTTTTGAAGGGAGTTCTTTTC CATATTTCATTGGTTCTCTAAAAAAATTAAGGTATCTTGATCTCTCTTCTATTGGTATTGTTGGAACTCTTTCAAATCAGTTTTGGAACCTTTCAAGACT ACAGTATCTTGATCTTAGTGGTAATTATTATGTTAATTTTACAAGTCTTGACTTTCTCTCCAACCTTTTTTCTCTTGAATATCTTGATTTGAGTGGAAAC AATCTCAGCCAAGTCATTGACTGGATACAAACTGTTAAGAAGTTTCCTTTCTTAAAAATCTTGCTGTTCAGGAATTGTGATCTTTCAAATAACAGTCCTC CCTCTCTTTCTTCTACAAATTCTTCTAAATCCCTAGCTGTCATTGATCTCTCTCACAACTATCTTGCTTCTTCCACATTCAATTGGTTGTCTAATTTTAG TAATAACCTTGTTGATCTTGATCTCAGTTATAATGATGGTGTTACTTTTAAAAGTCTTGACTTCCTTTCTAACCTTTTCTTTCTTGAGCATCTTCAGCTC TCATATATCCAATTACAAGGCTTAATTCCAGAAGCTTTCGCAAACATGATTTCTCTTAGGACTCTTGATCTATCCTTTAACGAATTACAAGGTTTAATTC CAGATGCTTTCACAAACATGACTTCTCTTAGGACTCTTGATCTATCCTGTAACCAATTACAAGGTTCAATTCCAGATGCTTTCACAAACATGACTTCTCT TAGGACTCTTTATCTATCCTTTAACCATTTACAAGGTTCAATTCCAGATGCTTTCACAAACATGACATCTTTTAGGACTCTTGATCTATCCTTTAACCAA TTACAAGGCGATTTGAGTACATTTGGGCGGATGTGCAGTTTAAAAGTACTGCATATGAGTGGAAACAATCTCACTGGAGAGCTGTCTCAGTTGTTTCAAG ACTCGCATGGATGCGTGGAGAGCTCACTAGAGATTCTGCAACTAGACGGAAATCAGCTTCATGGTTCCGTGCCTGACATCACAAGATTCACTTCCATGAC AGAGCTGGATCTCTCTCGGAATCAACTGAATGGATCTTTACCGAAACGATTTAGTCAACGTTCTGAAATTGTTATCTTGTACTTGAATGACAACCAACTC ACCGGATCACTTGCGGATGTTACGATGCTTTCATCATTGAGAGAGTTTGTGATTGCTAACAATCGCTTAGATGGGAATGTTTCTGAAAGTATTGGAAGCC TATATCAGCTTGAGCAATTGGATGTTGGCAGGAATTCCCTACAAGGTGTGATGTCTGAAGCTCACTTTTCAAATCTCTCCAAATTAACGGTATTGGATTT AACCGATAACTCCCTAGCTTTGAAATTTGAGTCTAACTGGGCTCCCACTTTTCAATTGGATCGCATATTTCTTTCGTCTTGTAATTTGGGTCCTCATTTC CCTCAGTGGCTTCGAAATCAAAACAATTTCATGGAGCTAGATATCTCTGGTTCTAGAATTTCAGATACAGTCCCTAATTGGTTTTGGAACTTGTCCAATT CCAAGTTGCAACTCTTAAACCTTTCTCACAACAAGATGAGTGGAATTTTGCCAGATTTCTCATCAAAATATTCCATTCTCCGAAACATGGATTTGAGTTT CAACCAGTTTGAGGGTCCATTACCACTTTTTTCATCAGATACCATATCAACCTTGTTTCTCTCGAACAATAAGTTTTCAGGTTCAGCTTCGTTTCTATGT AATATTGGAAGAAATATCAGTGTCCTTGACCTCTCAAATAACCTGTTGACGGGATGGATTCCTGATTGTTCAATGAATTTCACTCGTCTAAATATTCTGA ATTTCGCCAGCAACAACTTTTCAGGTAAAATTCCCAGCTCCATTGGATCAATGTTCCATCTTCAAACATTGAGTTTGCATAATAATAGCTTTGTTGGAGA ATTACCTTCGTCTTTGAGGAAGTGTACTTCTCTAGTATTTTTAGACCTGAGCTCAAATATGTTGCGAGGAGAAATACCAGGCTGGATAGGAGAAAGCATG CCCTCTCTGGAAGTCCTTTCCCTACAATCTAATGGATTCAATGGAAGCATACCGCAAAATCTTTGTCACCTATCAAATATTCTGATCTTGGACCTATCTC TAAACAATATCTCAGGAATCATTCCAAAGTGCCTTAATAACCTCACTTTCATGGTTCGTAAAACAGCGTCAGAATATCTGAATAATGCTGTTTCTAGTCT GTATTCCAGTACACCAGATGTTCTTAGTGCATATCAGAATAAAATCACGGTTGGATGGAAAGGAAGAGAGGATGATTATGGAAGCACACTAGGACTTTTG AGGATCATTAATTTTGCAAGAAATAAATTAATAGGTGAAATTCCAGAAGAAATAACAGGACTCTTACTGTTGCTTGCACTGAATTTATCCGGAAATAATT TGACTGGAGAAATCCCTCAAAAGATTTGGCAGTTGAAACAGTTGGAATCACTTGATTTGTCAGGAAACCAACTATCAGGAGTGATTCCTATCACAATGGC TGATCTAAATTTTCTGGCCTTCTTGAACCTCTCCAACAATCACTTGTCGGGGAGGATTCCGTCAAGCACTCAGCTGCAAGGCTTTAATGCTTCACAATTT ACCGGTAACCTTGCATTGTGCGGGAAGCCACTCTTACAGAGATGCCCTGGAGATGAGACGAATCAAAGTCCACCTGCTAATGATGACAACCGAGGCAAAG AAGTCGTTGCTGATGAATTCATGAAATGGTTTTGTACTGCTATGGGAATTGGTTTTAGTGTATTCTTTTGGGGAGTTTCAGGTGCTTTACTGCTAAAACG TTCCTGGAGACATGCCTATTTCCGGTTCTTGGATGAATCATGGGACTGGCTCTATGTGAAGGTAGCAGTGCGCAAGGCACGACTTCAACGAGCCTTTCAG TGGCTGCACGAGCACGGTCTTGCTTAG
AA sequence Show only first row Show all	>Potri.015G025300.5 pacid=42776166 polypeptide=Potri.015G025300.5.p locus=Potri.015G025300 ID=Potri.015G025300.5.v4.1 annot-version=v4.1 MLLIKHDRSFHHLYVLIVLLLLMKLAPGFISGVKGATFGCIERERQALLKFKEDLIDDFGLLSTWGSEEEKRDCCKWRGVRCNNRTGHVTHLDLHQENYI NGYLTGKISNSLLELQHLSYLNLNRNSFEGSSFPYFIGSLKKLRYLDLSSIGIVGTLSNQFWNLSRLQYLDLSGNYYVNFTSLDFLSNLFSLEYLDLSGN NLSQVIDWIQTVKKFPFLKILLFRNCDLSNNSPPSLSSTNSSKSLAVIDLSHNYLASSTFNWLSNFSNNLVDLDLSYNDGVTFKSLDFLSNLFFLEHLQL SYIQLQGLIPEAFANMISLRTLDLSFNELQGLIPDAFTNMTSLRTLDLSCNQLQGSIPDAFTNMTSLRTLYLSFNHLQGSIPDAFTNMTSFRTLDLSFNQ LQGDLSTFGRMCSLKVLHMSGNNLTGELSQLFQDSHGCVESSLEILQLDGNQLHGSVPDITRFTSMTELDLSRNQLNGSLPKRFSQRSEIVILYLNDNQL TGSLADVTMLSSLREFVIANNRLDGNVSESIGSLYQLEQLDVGRNSLQGVMSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCNLGPHF PQWLRNQNNFMELDISGSRISDTVPNWFWNLSNSKLQLLNLSHNKMSGILPDFSSKYSILRNMDLSFNQFEGPLPLFSSDTISTLFLSNNKFSGSASFLC NIGRNISVLDLSNNLLTGWIPDCSMNFTRLNILNFASNNFSGKIPSSIGSMFHLQTLSLHNNSFVGELPSSLRKCTSLVFLDLSSNMLRGEIPGWIGESM PSLEVLSLQSNGFNGSIPQNLCHLSNILILDLSLNNISGIIPKCLNNLTFMVRKTASEYLNNAVSSLYSSTPDVLSAYQNKITVGWKGREDDYGSTLGLL RIINFARNKLIGEIPEEITGLLLLLALNLSGNNLTGEIPQKIWQLKQLESLDLSGNQLSGVIPITMADLNFLAFLNLSNNHLSGRIPSSTQLQGFNASQF TGNLALCGKPLLQRCPGDETNQSPPANDDNRGKEVVADEFMKWFCTAMGIGFSVFFWGVSGALLLKRSWRHAYFRFLDESWDWLYVKVAVRKARLQRAFQ WLHEHGLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.015G025300 [exp]	0	1
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.001G166100 [exp]	4.24	0.7892
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050240 [exp]	5.65	0.8552
					Potri.002G146750 [exp]	6.70	0.8517
					Potri.006G120901 [exp]	8.00	0.8406
AT1G32310			unknown protein		Potri.003G095100 [exp]	11.00	0.8077
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.012G141400 [exp]	12.00	0.7629
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050120 [exp]	12.36	0.8209
AT5G09310			unknown protein		Potri.007G106200 [exp]	14.89	0.7290
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G180000 [exp]	16.49	0.8256
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Potri.012G133100 [exp]	18.65	0.7396

Compare expression of checked genes

Potri.015G025300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.