Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 374 / 6e-115 disease resistance family protein / LRR family protein (.1) AT4G13920 251 / 2e-70 AtRLP50 receptor like protein 50 (.1) AT1G74170 250 / 2e-69 AtRLP13 receptor like protein 13 (.1) AT2G33060 228 / 1e-62 AtRLP27 receptor like protein 27 (.1) AT4G13810 223 / 1e-61 AtRLP47 receptor like protein 47 (.1.2) AT3G05370 223 / 1e-60 AtRLP31 receptor like protein 31 (.1) AT2G32660 216 / 3e-60 AtRLP22 receptor like protein 22 (.1) AT5G27060 221 / 7e-60 AtRLP53 receptor like protein 53 (.1) AT4G13880 217 / 2e-59 AtRLP48 receptor like protein 48 (.1) AT3G25020 218 / 5e-59 AtRLP42 receptor like protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G025200 [exp] 1518 / 0 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 1517 / 0 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 1239 / 0 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 763 / 0 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 729 / 0 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 695 / 0 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 627 / 0 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 585 / 0 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 536 / 5e-177 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 444 / 6e-140 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 441 / 8e-139 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 436 / 3e-137 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 436 / 4e-137 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 432 / 8e-136 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 427 / 6e-134 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 423 / 2e-132 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 421 / 4e-131 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 419 / 4e-131 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 411 / 9e-128 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.015G025800.4 pacid=42775281 polypeptide=Potri.015G025800.4.p locus=Potri.015G025800 ID=Potri.015G025800.4.v4.1 annot-version=v4.1 ATGCCCAAAAACTATGTTTTAATTATTGTGCTTGTATTGTTGCACATCCCTTTTCCTGGATTCATTATAGGGGCAACAGGGGGGAAAATTGGGTGCATTG AGCGGGAGAGACAAGCACTTCTTAAGTTTAAAGAAGATATTACTGATGAATATGGTGTTCTTTCTTCTTGGGGGGGTGAAGAAGAGAAAAGAGATTGCTG CAAGTGGAGAGGAGTTGGCTGTGACAACATAACTGGTCATGTTACTTCACTTAATCTTCATTCCTCACCTTTGTATGAGCATCATTTTACGCCTCTAACA GGCAAGGTTAGTAATTCATTACTTGAGTTGCAGCATTTGAATTACTTGGACCTGAGTTTGAATAATCTTGATGAGAGTATCATGGATTTCATTGGCTCCC TAAGCAGCCTAAGATACCTGAACCTCTCGTACAACCTTTTCACTGTAACCATCCCATATCACCTCAAGAACCTCTCAAGATTGCAGTCTCTTGATCTCAG CTATAGTTTTGATGCCAGTGTTGAAAATCTTGGCTGGCTTTCTCATCTTTCTTCTTTGGAGCATCTTGATTTGAGTGGTTCCGACCTCAGCAAGGTAAAT GACTGGCTGCAAGTGGTTACCAACCTCCCTCGCCTAAAAGACTTGCGATTAAATCAGTGTCGTCTTACGGATATAATTCCTTCACCTCTTTCTTTCATGA ACTCTTCTAAATTTCTTGCTGTACTCCATCTCTCTAATAACAATCTTTCTTCTGCAATATACCCCTGGCTGTATAACTTAAGTAACAGCCTTGCTGACCT TGACCTTTCTGGTAACCAGTTACAAGGTTTGGTTCCAGATGGCTTCAGAAAGATGAGTGCTCTTACAAATCTTGTTCTATCCCGTAATCAGCTTGAAGGT GGCATTCCAAGATCTCTTGGGGAGATGTGCAGCTTGCATACGCTAGATTTGTGCCACAACAATCTCACCGGGGAGCTTTCTGATCTCACTCGGAACTTGT ATGGACGCACAGTTAGCTCGCTGGAGATTTTAAGATTATGTCAGAATCAACTCCATGGTTCATTGACTGATATTGCTAGATTTTCTTCCTTGAGAGAATT AGATATCTCGAACAATCAACTGAATGGGTCTATACCAGAAAGTATTGGATTCCTTTCTAAGCTTGACTATTTCGATGTTTCTTTTAATTCTTTGCATGGT TTGGTGTCTGGCGGACATTTTTCTAATCTCTCCAAATTAAAGCATCTGGATTTGTCTTATAATTCCTTAGTTTTGAGATTCAAATCCGATTGGGACCCTG CTTTTCAATTGAACAACATTCATCTTAGTTCATGCCACTTGGGGCCTTGTTTCCCAAAATGGCTGCGAACTCAGATAAAAGTCCGTTTGCTAGATATCTC CAGTGCTAGCATTTCAGATATCGTCCCTAATTGGTTTTGGAACCTACTGCCTAAGTTGGCTTTCTTAAACATATCTCACAACTTGATGAGGGGAACACTG CCAGATTTTTCATCAGTAGATGCAGTTGATGATACATTCCCGGGGTTTGATTTGAGTTTTAATCGGTTTGAGGGTCTACTGCCAGCTTTTCCTTTTAACA CAGCCTCATTGATTCTTTCTAACAATTTGTTTTCAGGGCCAATTTCTCTTATATGCAATATTATAGGCAAGGATTTGAGCTTCCTTGATCTGTCAAACAA TCTGTTAACTGGACAACTTCCAAATTGTTTCATGAATTGGAGCACACTTGTTGTTCTGAATTTGGCTAACAACAATTTGTCAGGTGAAATTCCAAGCTCT GTTGGATCATTGTTTTCCCTTCAAACATTGAGTTTAAACAACAATAGCCTCTATGGAGAATTGCCTATGTCTTTAAAAAACTGTAGCATGTTGAAATTCT TGGACCTTAGTAGAAACCAATTATCCGGAGAAATACCAGCTTGGTTAGGAGAAAGCCTCTCATCTTTGATGTTCCTTTCCCTTCAATCTAATGAATTCAT TGGAAGCATCCCACTGCATCTTTGTCAGCTAACAAATCTTAGGATCCTGGACCTCTCCCAAAACACCATCTCTGGAGCCATACCAAAGTGTCTCAACAAT CTAACAGCTATGGTTCTGAAAGGAGAAGCAGAGACTATCATTGACAATCTTTACTTGACTTCTATGAGATGTGGAGCAATTTTTTCTGGACGCTACTATA TCAATAAGGCATGGGTTGGATGGAAAGGAAGAGATTATGAGTATGAGAGATACCTTGGACTGTTGCGTGTCATTGATTTTGCAGGCAACAATTTATCTGG AGAAATTCCAGAGGAAATAACTGGCCTGCTTGGGTTGGTTGCACTGAATTTGTCAAGAAATAATTTGACTGGAGTAATCCCCCAAACAATTGGGCTGTTG AAATCGTTAGAATCTCTTGATTTGTCAGGAAATCAGTTCTCTGGTGCAATTCCAGTCGCAATGGGTGATCTGAATTTTCTGAGTTACTTGAATGTCTCCT ACAACAACTTGTCTGGGCAAATACCATCAAGCACTCAGCTTCAGAGCTTTGATGCTTCAGCTTTTAATGGCAATCCTGCATTGTGTGGTCTACCAGTCAC CCATAAATGCCTTGGAGGTGATTTGCCTCGAAATCCAGTGATGAATGGTGTAATCCAAGACAATCAAGAAACTGTTCATGAGTTCAGTGCTTGGTTTTAT ACTGGCATGGGAAACGGATTTTGTGTATTCTTTTGTGGACTTTCAGGTGCTTTACTGCTCATACGTTCTTGGAGACATGCCTATTTCCAGTTTTTGGATG GATCATGGGGTTTGCTCTCTCGATACTGGCAGCTCATAAGGCTAGATAAAAAGCACTGCCAAACTTGCAGTTAG
AA sequence Show only first row Show all	>Potri.015G025800.4 pacid=42775281 polypeptide=Potri.015G025800.4.p locus=Potri.015G025800 ID=Potri.015G025800.4.v4.1 annot-version=v4.1 MPKNYVLIIVLVLLHIPFPGFIIGATGGKIGCIERERQALLKFKEDITDEYGVLSSWGGEEEKRDCCKWRGVGCDNITGHVTSLNLHSSPLYEHHFTPLT GKVSNSLLELQHLNYLDLSLNNLDESIMDFIGSLSSLRYLNLSYNLFTVTIPYHLKNLSRLQSLDLSYSFDASVENLGWLSHLSSLEHLDLSGSDLSKVN DWLQVVTNLPRLKDLRLNQCRLTDIIPSPLSFMNSSKFLAVLHLSNNNLSSAIYPWLYNLSNSLADLDLSGNQLQGLVPDGFRKMSALTNLVLSRNQLEG GIPRSLGEMCSLHTLDLCHNNLTGELSDLTRNLYGRTVSSLEILRLCQNQLHGSLTDIARFSSLRELDISNNQLNGSIPESIGFLSKLDYFDVSFNSLHG LVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLNNIHLSSCHLGPCFPKWLRTQIKVRLLDISSASISDIVPNWFWNLLPKLAFLNISHNLMRGTL PDFSSVDAVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIIGKDLSFLDLSNNLLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSS VGSLFSLQTLSLNNNSLYGELPMSLKNCSMLKFLDLSRNQLSGEIPAWLGESLSSLMFLSLQSNEFIGSIPLHLCQLTNLRILDLSQNTISGAIPKCLNN LTAMVLKGEAETIIDNLYLTSMRCGAIFSGRYYINKAWVGWKGRDYEYERYLGLLRVIDFAGNNLSGEIPEEITGLLGLVALNLSRNNLTGVIPQTIGLL KSLESLDLSGNQFSGAIPVAMGDLNFLSYLNVSYNNLSGQIPSSTQLQSFDASAFNGNPALCGLPVTHKCLGGDLPRNPVMNGVIQDNQETVHEFSAWFY TGMGNGFCVFFCGLSGALLLIRSWRHAYFQFLDGSWGLLSRYWQLIRLDKKHCQTCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.015G025800 [exp]	0	1
AT1G65840		ATPAO4	polyamine oxidase 4 (.1)		Potri.004G075800 [exp]	4.47	0.6528
AT1G66120			AMP-dependent synthetase and l...		Potri.006G036200 [exp]	6.48	0.6541
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.007G126800 [exp]	10.19	0.5979
AT2G34930			disease resistance family prot...		Potri.015G025200 [exp]	12.80	0.6177
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.018G121200 [exp]	16.06	0.6277
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Potri.007G090200 [exp]	20.85	0.5941
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Potri.006G061800 [exp]	24.81	0.6054
AT5G61910			DCD (Development and Cell Deat...		Potri.012G108200 [exp]	26.32	0.6045	Pt-BON1.3
AT2G36090			F-box family protein (.1)		Potri.001G452000 [exp]	27.62	0.6082
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.001G376100 [exp]	33.04	0.5827

Compare expression of checked genes

Potri.015G025800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.