Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49660 77 / 4e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 64 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 62 / 7e-10 transducin family protein / WD-40 repeat family protein (.1) AT5G08560 57 / 2e-08 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 57 / 3e-08 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 53 / 3e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G15470 49 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT4G00090 49 / 9e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT2G20330 49 / 1e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G26900 49 / 1e-05 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148500 [exp] 68 / 3e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 64 / 7e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G059500 [exp] 55 / 9e-08 AT1G52730 573 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G087200 [exp] 55 / 9e-08 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.001G174600 [exp] 53 / 3e-07 AT1G52730 577 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 52 / 1e-06 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G241800 [exp] 52 / 1e-06 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.014G069400 [exp] 51 / 2e-06 AT4G00090 592 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 50 / 3e-06 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039636 [exp] 59 / 3e-09 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 59 / 3e-09 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 59 / 7e-09 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 56 / 4e-08 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10022797 [exp] 56 / 7e-08 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10010384 [exp] 52 / 1e-06 AT5G67320 572 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10011863 [exp] 52 / 2e-06 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10024972 [exp] 51 / 2e-06 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10022454 [exp] 51 / 3e-06 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10016759 [exp] 51 / 3e-06 AT3G49180 209 / 2e-62 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.015G026100.1 pacid=42774897 polypeptide=Potri.015G026100.1.p locus=Potri.015G026100 ID=Potri.015G026100.1.v4.1 annot-version=v4.1 ATGGAGAACATGCAATATGCAGAGGAGCTAGTAAGAGAATTTCTTGTATTCAGAGGGTTTACTAATACCCTACAAGCTCTTGATAATGAATTATCCACTG ATATCGGTAAAGGGTTTCATGTTGATAAGTTGTTAGACTTGATATTTGCTATTTACATTCCTAGATTTCAAGTTGATAAATTAGTGGGTTTGCTTAATTT TTTTAAGCATTGCTTTTCCAACTTATCGGAGAATGTGCTTGTTGATACTTTGTTAAAATTGGAGGGTTATATTTTGCGGTATTATATTGTTTACGCAATT CAATCGGGGAGGAAAGATATGGTTCTAGAGTTTTTTGGGATCTATGGGAATGAGCTGGTGCAAAAAGGGCATGGCTGGACTCCATGGTTCGCTATTCCCT ATTTGAAGAATCCTAGCTTGGATCCTCAGTTTCGGATTTATTTCTCGAAGGAATGGTATGAAGGGTTGCGGTTGTCTGTAAGGAATTTTTTCAATGAGAT CTTCAATGGTACTCGCATCCCTGCGCTGTTGAAGATAAGTTCAGATAAAAACACTGTCAACCATCTAAAAAAAGATATCAAGCAGCTTAATCTTAAACTA TCTCAACTTCAGGCTTTATTGGAGGAGAAAGAGGCTTTGATATGCCGGTTAAGGAGTAGCGCTGGTAATGCTCCATCAACATTGGGAACAAGTGTGGGAC AAGCTAACAGTATAACTTCATCTAGTGGCATGGATGAAGAAAATTTTATTTTATCTGTAAGTGACAAGGAAATTGATGTTCCTGCAACCCCGGGTCTAGG AGAAAGAGAGCTCAATCCGGAACAGGCTGTTGGGGAACCTGCCAAAAATGTGTCCAGGCCCCGGAATGAATCAAGCTCTATTTCTGATATTGACATTGAA AGTGGTAAAAGTGATGTCAGTCATATGAACTGTGATAACTCTTATAAAGATGATGGTTGCCAGATGCAGGGTGAAGAAGAATTCCCAGAAGTGAAAGTGG ACTTCCAGGAGACATTTTTAGGCCACACAAGTGCAATCAGTCGTTGCCGCTTTTCTGCCTCTGGCAACAATATAGCTAGTGCTTCTGTTGATGGCACAGT CAGGATATGGACATATGACTCATCAACTTCAGCATCAAGAAATGCAACCATATATTGCGGGGCAGAGATTATGTCTCTTGACTGGGAATGCAAATCTGAC CGCTTGCTTCTCATAGGCACCGCTGATGGAGGAATCAAAGCATGGAATGTTGATGCAAAGAGAGTTGTCTGTGATCTGAACACAAGTGAAGCATTTCCCA GTGTCCTGGATCTAAAGTGCAGCCCTGTAGAACCAATTTTTGTTTCTGCAGCAGCTTCTAGAAGGCATGGCTCAAACTATATTGAAAGTTTGGGATTTGC TTCATTAACTGTATGGAACATGAAGACGTGGAGAGCAATGTCATCTCTACCTCTTGGTGAAGATCCTCCGGCAATTACTTCCTTAAGCTTCAATCACAAC GGAAAGATTTTAGCAGCTGCTGCAACTGATGGAATGATCCACATTTTTGACATGGCTGCTGGTCTACAAATTACTGGGTGGCCTGCACATGATACTGCTA TAAGCTCAATTCTTTTTGGACCTGATGAGACAAGTATTTTCAGCTTGGGTTCAGATGGGAAGATATTTGAATGGAGTTTGCAAAACCAAGGTCATATCCT TTGGTCGAGGAATGATGCCAGGTTCTGTGACCCAGGGACCTCAAAACATTGTAGACATGAAATGGCTTTGGATGCAAATGGAAGGAAACTATTGGTAACA TCTGGTTCAGTAAGAGCACCCATATATCAGGTTCGAGGGTATATGAATGGTCTTAAAACTCTTCCACACAGTGCAGCTATAACAACAGTGGATTGGCACC CGACTTTACCCATTTTCTTGACTGGGTCTGCTGACAACTCTGTTCGAGTGACATCTATATTGTAA
AA sequence Show only first row Show all	>Potri.015G026100.1 pacid=42774897 polypeptide=Potri.015G026100.1.p locus=Potri.015G026100 ID=Potri.015G026100.1.v4.1 annot-version=v4.1 MENMQYAEELVREFLVFRGFTNTLQALDNELSTDIGKGFHVDKLLDLIFAIYIPRFQVDKLVGLLNFFKHCFSNLSENVLVDTLLKLEGYILRYYIVYAI QSGRKDMVLEFFGIYGNELVQKGHGWTPWFAIPYLKNPSLDPQFRIYFSKEWYEGLRLSVRNFFNEIFNGTRIPALLKISSDKNTVNHLKKDIKQLNLKL SQLQALLEEKEALICRLRSSAGNAPSTLGTSVGQANSITSSSGMDEENFILSVSDKEIDVPATPGLGERELNPEQAVGEPAKNVSRPRNESSSISDIDIE SGKSDVSHMNCDNSYKDDGCQMQGEEEFPEVKVDFQETFLGHTSAISRCRFSASGNNIASASVDGTVRIWTYDSSTSASRNATIYCGAEIMSLDWECKSD RLLLIGTADGGIKAWNVDAKRVVCDLNTSEAFPSVLDLKCSPVEPIFVSAAASRRHGSNYIESLGFASLTVWNMKTWRAMSSLPLGEDPPAITSLSFNHN GKILAAAATDGMIHIFDMAAGLQITGWPAHDTAISSILFGPDETSIFSLGSDGKIFEWSLQNQGHILWSRNDARFCDPGTSKHCRHEMALDANGRKLLVT SGSVRAPIYQVRGYMNGLKTLPHSAAITTVDWHPTLPIFLTGSADNSVRVTSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	0	1
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	1.73	0.8985
AT5G12370		SEC10	exocyst complex component sec1...		Potri.002G164100 [exp]	4.24	0.8557
AT1G01880			5'-3' exonuclease family prote...		Potri.014G077300 [exp]	5.09	0.8382
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	5.47	0.8704
AT1G49160		WNK7	Protein kinase superfamily pro...		Potri.005G057300 [exp]	5.47	0.8571
AT5G05310			TLC ATP/ADP transporter (.1.2....		Potri.019G048700 [exp]	6.78	0.8233
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	7.48	0.8533	WRKY2.2
AT5G48520		AtAUG3	augmin 3, unknown protein		Potri.014G191100 [exp]	9.32	0.8667
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Potri.011G139300 [exp]	10.39	0.8652	ATMAK3.5
AT4G03115			Mitochondrial substrate carrie...		Potri.014G135530 [exp]	16.24	0.8149

Compare expression of checked genes

Potri.015G026100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.