Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41620 1209 / 0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1) AT3G57350 1152 / 0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034800 [exp] 1476 / 0 AT2G41620 1268 / 0.0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029548 [exp] 1256 / 0 AT2G41620 1301 / 0.0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1) Lus10039624 [exp] 1245 / 0 AT2G41620 1273 / 0.0 Nucleoporin interacting component (Nup93/Nic96-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04097 [poplar] [flax] Nic96 Nup93/Nic96
Representative CDS sequence Show only first row Show all	>Potri.015G026200.1 pacid=42775236 polypeptide=Potri.015G026200.1.p locus=Potri.015G026200 ID=Potri.015G026200.1.v4.1 annot-version=v4.1 ATGGCAAGCGAACAGGACATGAGTAACTGGACCGATCTACTCCACTCCTCCACCAAACTTCTCGAACAAGCTGCTCCTTCCCCTCAATTCCCTCCTCTTC AGAGGAACTTAGATCAATTAGAAGCATTATCGAAGAAACTCAAGGCTAAAGCCATAAGACCCGAGGCTCCTTCGCAATCTATTGCCGCTACAAGGCTTCT TGCACGTGAAGGAATAAATGCCGAGCATCTTGCACGAGATCTAAAGTCTTTTGAATTGAAGACAACATTTGAGGATGTGTTTCCTGCCGAGGCTACAAGT GTTGAAGAGTATCTTCAACAGTTTCATGAAATGGCAATGGTATCAGCAATCCAGGAAGCTCAGAAGGATAACGTAAGAAGTTTTAATGATTACATGATGA GAGTTTTGGAGGAGGATTGGCAAAAGGAAAGATGTGACTTTCTTCAGAGCTTGAGCCGAATTTCATCATTGCCCAGGACTAACATAGTCGATTCAAGTAC TGGAGGTACTCGTTCTGGTCAACTAGCTTCTCTGGCTTCCAGCCCTCATGCTTCTTCTGGTCCATCTGGCATGGAAATTGTACCTTTAGCTAACAAACCC ATTCTGGAGAAAAAAGCTTCGGCGTGTGCTGAGGTTGTGAAGAATTTGAACCATGCGCGAGAGCATGGCTCACAATTCAAGCCTGCAACAGCTTTCAAAG GTGCTTATGAAAGCTTAGGTGTTGAAGTATCTGGTGGAAAATCTGTTAACATGCAAAAGATATGGCACCTTGTTCAGACATTGGTGGGTGAAAATACAAC CATGCAACCGATTGTTTCAAGAAAAATGTCATTAGTTATTGGTGCAAGGCGCCATCTTGAATGGGGCCATGAAAAATACATCATGGATACAATACAAAAT CATCCAGCAAAGGCTGCTCTTGGTGGAGCTGTTGGGAATCTACAAAGAGTTCATGCATTTCTTCGGATTCGGTTAAGGGATTATGGAGTTCTGGATTTTG ATGCAGGTGATACTCATAGGCAGCCTCCAGTTGATACCACTTGGCAGCAGATCTATATTTGCTTGAGAACTGGGTATTATGAGGAAGCAAGAACTGTTGC CCTGTCTTCCCGTGCTTCACACCGATTTGCTCCTATGCTCATGGAGTGGATTAACTCTGGAGGTATGGTGCCTGCGGATATTGCAGCTGCTGCTTCAGAA GAATGTGAAAAAATGTTAAGAATGGGTGATCGGGTGGGTCGAGCTGCATATGACAAGAAAAAGTTGTTGCTCTATGCTATAGTATCTGGTTCTCGCAGGC AAATTGACCACCTGCTGAGAGATCTGCCAACCCTTTTCAATACTATAGAGGATTTCCTGTGGTTCAAATTATCAGCTGTACAAGAGTACCATGGTGGGAC CTCATCTCAGGTCCTGAATGAAAGCTTGGTACCATACAGTTTGGAGGATTTGCAGGCATACTTGAATAAATTTGAGCCATCATATTATACTAAAAATGGG AAAGACCCTCTCGTATACCCTTATGTGTTACTATTAAGCGTCCAGATGCTACCAGCTATCTTATATTTGTCTAAGGAAGCTGCAGATGATGGATACAATA TCAACGCAGTCCATGTATCAATTGCACTAGCAGACCATGGGGTTCTTACTGAAGGTGCTGGAGCTGGGCAAAAACTTGGGGTAATGGATGCTTATGCAGA GGTCGCTAGCATAATTAGGCAGTATGGATCTGCATATTTACGTCATGGAAATCTCTCAATGGCACTAGAATATTATGCCCAAGCTGCAGCTACAGTAGGT GGTGGAGAAGCATCATGGACTGGGAGAGGTAATATTGATCAGCAGAGGCAGAGAAGCATGATGTTGAAGCAACTCCTCACTGAGCTATTGCTAAGGGATG GTGGTATTCATCTTTTACTGGGTCCAAGAGGTGCCGGAGAAGAAGGTGAATTGGCACGATTTTTGACTGATTCTAAAGAAAGACAGCAATTTCTACTTGA AGCTGCTCGCAAGTGTCAAGAAGCTGGACTAGATGAAAAGTCCATAGAAATTCAGAAGAGAGTTGGGGCATTCTCTATGGCTTTAGATACAATCAATAAG TGCCTGTCTGAAGCAATTTGTGCACTATCACGTGGTAGATTGGATAGTGAGAGCTGGACTGCTGGTCTCATTAATTCTGGCAATGAGATTCTGGAGACAT TTAAGTATTATCCTAATGAAAGTTTTCAAGAAAGAGGTCATGTCATAGAGCAAGAAACAGTATTAAGACAGCTTGAGGCAACATTATCTGTTCACAAGTT GGCGAGAATGGGTCACTATCTTGATGCTTTAAGGGAGCTTGCCAAACTTCCTTTTCTTCCATTTAATCCACGAGTGCCAGATGTCACTGTTGATGCACTT CAGAATTTATCCCTTCATGTTCAGGCTTGTGTGCCATACCTTTTGAAGGTTGCTTTAACATGTTTGGATAATGTGACAGATTCTGATGGGTCACTTCGTG CCATGAGAGCAAAGATTACACAGTTCCTTGCAAATAATATGAATCGGAATTGGCCTCGTGATTTGTATGAGAAGGTTGCTCGAAGTTTGTGA
AA sequence Show only first row Show all	>Potri.015G026200.1 pacid=42775236 polypeptide=Potri.015G026200.1.p locus=Potri.015G026200 ID=Potri.015G026200.1.v4.1 annot-version=v4.1 MASEQDMSNWTDLLHSSTKLLEQAAPSPQFPPLQRNLDQLEALSKKLKAKAIRPEAPSQSIAATRLLAREGINAEHLARDLKSFELKTTFEDVFPAEATS VEEYLQQFHEMAMVSAIQEAQKDNVRSFNDYMMRVLEEDWQKERCDFLQSLSRISSLPRTNIVDSSTGGTRSGQLASLASSPHASSGPSGMEIVPLANKP ILEKKASACAEVVKNLNHAREHGSQFKPATAFKGAYESLGVEVSGGKSVNMQKIWHLVQTLVGENTTMQPIVSRKMSLVIGARRHLEWGHEKYIMDTIQN HPAKAALGGAVGNLQRVHAFLRIRLRDYGVLDFDAGDTHRQPPVDTTWQQIYICLRTGYYEEARTVALSSRASHRFAPMLMEWINSGGMVPADIAAAASE ECEKMLRMGDRVGRAAYDKKKLLLYAIVSGSRRQIDHLLRDLPTLFNTIEDFLWFKLSAVQEYHGGTSSQVLNESLVPYSLEDLQAYLNKFEPSYYTKNG KDPLVYPYVLLLSVQMLPAILYLSKEAADDGYNINAVHVSIALADHGVLTEGAGAGQKLGVMDAYAEVASIIRQYGSAYLRHGNLSMALEYYAQAAATVG GGEASWTGRGNIDQQRQRSMMLKQLLTELLLRDGGIHLLLGPRGAGEEGELARFLTDSKERQQFLLEAARKCQEAGLDEKSIEIQKRVGAFSMALDTINK CLSEAICALSRGRLDSESWTAGLINSGNEILETFKYYPNESFQERGHVIEQETVLRQLEATLSVHKLARMGHYLDALRELAKLPFLPFNPRVPDVTVDAL QNLSLHVQACVPYLLKVALTCLDNVTDSDGSLRAMRAKITQFLANNMNRNWPRDLYEKVARSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41620			Nucleoporin interacting compon...		Potri.015G026200 [exp]	0	1
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	2.64	0.8646
AT3G53320			unknown protein		Potri.006G131650 [exp]	4.12	0.9074
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.017G149100 [exp]	5.47	0.8738
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.001G006500 [exp]	7.34	0.8731
AT5G05510			Mad3/BUB1 homology region 1 (....		Potri.010G185500 [exp]	8.66	0.8493
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	14.56	0.8704
AT4G22860			Cell cycle regulated microtubu...		Potri.003G117800 [exp]	18.84	0.8679
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.008G083200 [exp]	24.49	0.8628
AT3G53320			unknown protein		Potri.016G085600 [exp]	26.03	0.8671
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	26.15	0.8566	Pt-CALS1.3

Compare expression of checked genes

Potri.015G026200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.