Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24080 687 / 0 Protein kinase superfamily protein (.1) AT1G34300 441 / 3e-142 lectin protein kinase family protein (.1) AT2G19130 426 / 4e-136 S-locus lectin protein kinase family protein (.1) AT4G32300 405 / 1e-128 SD2-5 S-domain-2 5 (.1) AT4G00340 367 / 5e-114 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 367 / 1e-113 S-locus lectin protein kinase family protein (.1) AT5G60900 337 / 2e-103 RLK1 receptor-like protein kinase 1 (.1) AT1G61420 297 / 6e-88 S-locus lectin protein kinase family protein (.1) AT4G21390 296 / 2e-87 B120 S-locus lectin protein kinase family protein (.1) AT1G61440 291 / 4e-86 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034901 [exp] 1012 / 0 AT5G24080 520 / 0.0 Protein kinase superfamily protein (.1) Potri.006G254600 [exp] 453 / 9e-147 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.013G115800 [exp] 452 / 9e-147 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 452 / 4e-146 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.018G027300 [exp] 446 / 5e-144 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.013G115700 [exp] 444 / 6e-143 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 430 / 8e-138 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 428 / 5e-137 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G119200 [exp] 424 / 2e-135 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039315 [exp] 1221 / 0 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 427 / 2e-136 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10024195 [exp] 411 / 8e-131 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10043391 [exp] 404 / 2e-128 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 404 / 9e-128 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10042266 [exp] 400 / 4e-127 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 398 / 9e-126 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10000249 [exp] 395 / 2e-124 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10013252 [exp] 384 / 1e-120 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10031230 [exp] 378 / 4e-118 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.015G026300.1 pacid=42775902 polypeptide=Potri.015G026300.1.p locus=Potri.015G026300 ID=Potri.015G026300.1.v4.1 annot-version=v4.1 ATGGCTAATTGTTTGGTCTTTTTTCTCTTGGTTTTAGTTTGGCTTTGGGTTAGGGCTACGGCTAGCCACATTGGTTTGGGTTCAAGATTGATGGCTCGTG ATCAAAATGAAGCATGGGTTTCAGATAATGGTACGTTTGCTTTTGGTTTAACTCCAGCGGCTAATGCTCGTGACCAATTTCAAGTGGCCATTTGGTTCGC AGATCTTCCTGGTGATCGAACCATAGTTTGGTCAGCTAATAGTGATGATCTGATATATAGAAACTCCCTGGTCAACAAAAACGCATTCCTGGAGCTGGAC ACCACCGGCAACCTAGTTCTAATCGACGGAGAAAGAACAGTTTGGATGTCAAACACCTCCGGCGCAGGCATTACATCAGCAAGCATGGAAGAAACTGGCA ACTTCATCCTCCACACTGACACTAACCACTCAGCATGGCAAAGTTTTGAACATCCTTCCGATACTTTACTTCCAAACCAGCCTTTAACAGTATCCCTTGA ACTAACATCACCAAAATCACCTTCACAGGGTGGCTATTACTCACTCAAAATGTTACAACAGCCTACTTCATTAAGCCTTGCTTTAACGTACAACTTGCCT GAAACCTATGATGCTTCACCTGAAGCTTATGCCAACTTTTCCTACTGGCCTGGACCGGATATTTCAAATGTTACTGGGGATGTTGTCGCGGTTTTGGATG ATGCAGGAAGCTTTGGAATTGTGTATGGTGAATCATCAAATGGGGCAGTTTATGTGTATAAGAATGATGGTGACTATAATGGATTAGGTTCAGCTACAAA TCAATCAAGTACTCGGTCAACAGTTCTTCGAAGACTGATACTTGAGACTAATGGGAATTTGAGACTGTATCGATGGGATAACAATGTTAATGGTTCACGG GAGTGGGTTCCAGAGTGGGCTGCAGTGTCAAATCCTTGTGACATTGCTGGAATTTGTGGTAATGGAGTATGTAATTTGGATAGAAGCAAGACTAATGCTT CTTGTACATGCTTGCCTGGTACTTCCAAAGTTGGGGGTGACAACTTCTGCGTGGAGAACTCATCATCGATTGGAAGTTGTGATTCACGAAATACAAATCA AACATCTGAGTTCAGGATTGCAGCTGTGCAGCAAACAAGTTATTTTTTCTCCGATTTTTCGGTGGTAGCAAATTACAGTGATATTCCTACAGTGTCAAAG TGTGGTGATGCTTGTCTATCAGATTGTGAGTGTGTAGCTTCTGTTTATGGACTTGATGATGAGAAGCCTTATTGTTGGATACTGAGGAGCTTAGACTTTG GTGGATATGAGGACACTGGATCCACCTTGTTTGTGAAGGTTAGAGGCAACGAATCGATGTCTTCAGGAGGCAATAAAAGGGGGACAGATGATGATAATAC AAGAAAGAAGGTTGTGGTTATACCTATAGTTCTCAGTATGGCAATTCTTGTTGGCCTACTATGCCTATTACTATATTTCAATGTTCATAAAAAGAGATAC TTGGAAAGAGCTATGGAGAGCTCTCCTATTCTTCCTGGTGCTCCAATACATTTTACTTACCGCGACTTGCAGATTCGTACCTGCAATTTTTCACAGCTAC TTGGAACAGGAGGATTTGGAAGTGTATACAAAGGAAGCCTTGGAGATGGAACTTTGGTTGCTGTAAAGAAGCTAGACAAGGTTTTACCTCATGGGGAGAA AGAATTTATAACTGAAGTAAATACCATAGGCTCTATGCATCACATGAACCTGGTTCGTCTATGCGGGTACTGCTCGGAGGGATTGCAACGTCTCCTAGTT TATGAGTTCCTGAAAAATGGATCATTAGATAAATGGATCTTTCCTTCATATAGTAGCCGGGATAGACTACTGGATTGGTCAACTCGCTTCGATATAGCCA TTACTACTGCAAAAGGGATTGCGTACTTTCACGAGCAATGCAGAGACCGGATAATTCACTGCGATATCAAGCCGGAGAATATTTTGTTAGATGAGAATTT CTGTCCTAAAGTATCAGATTTTGGACTAGCTAAGTTAATGGGAAGGGAGCATTCGCATGTTGTGACCATGGTTCGAGGAACTAGAGGCTATTTGGCTCCA GAATGGGTTAGCAACAGGCCTATTACTGTGAAGGCTGATGTTTATAGTTATGGAATGCTTCTTTTGGAGATTGTTGGTGGCAGAAGAAACCTTGACATGT CTTTTGATGCAGAGGACTTCTTTTACCCTGGGTGGGCTTTCAAGGCGATGATGAATGATACACCACTGAAAGCAGCAGATCGCAGACTAGAAGGATCAGT AAAAGAAGAAGAGCTAATGAGAGCAGTGAAAGTTGCTTTTTGGTGCATTCAAGATGAGGTCTACTCGAGACCTTCAATGGGAGAAGTGGTGAAAATGCTA GAAGGATCAATGGAGATAAACACACCACCAATGCCACAAACTGTCTTGGAATTGATAGAAGAAGGCTTAGATCAAGTTTACAAGGCCATGAAGAGAGAAT TCAATCAATATAGCTCCTTCACCACTGCTACTGGTCACCCGTCATCTCATGCTACGTGCAGTTATTCAACAATGTCACCCAGATAG
AA sequence Show only first row Show all	>Potri.015G026300.1 pacid=42775902 polypeptide=Potri.015G026300.1.p locus=Potri.015G026300 ID=Potri.015G026300.1.v4.1 annot-version=v4.1 MANCLVFFLLVLVWLWVRATASHIGLGSRLMARDQNEAWVSDNGTFAFGLTPAANARDQFQVAIWFADLPGDRTIVWSANSDDLIYRNSLVNKNAFLELD TTGNLVLIDGERTVWMSNTSGAGITSASMEETGNFILHTDTNHSAWQSFEHPSDTLLPNQPLTVSLELTSPKSPSQGGYYSLKMLQQPTSLSLALTYNLP ETYDASPEAYANFSYWPGPDISNVTGDVVAVLDDAGSFGIVYGESSNGAVYVYKNDGDYNGLGSATNQSSTRSTVLRRLILETNGNLRLYRWDNNVNGSR EWVPEWAAVSNPCDIAGICGNGVCNLDRSKTNASCTCLPGTSKVGGDNFCVENSSSIGSCDSRNTNQTSEFRIAAVQQTSYFFSDFSVVANYSDIPTVSK CGDACLSDCECVASVYGLDDEKPYCWILRSLDFGGYEDTGSTLFVKVRGNESMSSGGNKRGTDDDNTRKKVVVIPIVLSMAILVGLLCLLLYFNVHKKRY LERAMESSPILPGAPIHFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGLQRLLV YEFLKNGSLDKWIFPSYSSRDRLLDWSTRFDIAITTAKGIAYFHEQCRDRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAP EWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAFKAMMNDTPLKAADRRLEGSVKEEELMRAVKVAFWCIQDEVYSRPSMGEVVKML EGSMEINTPPMPQTVLELIEEGLDQVYKAMKREFNQYSSFTTATGHPSSHATCSYSTMSPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24080			Protein kinase superfamily pro...		Potri.015G026300 [exp]	0	1
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.017G036700 [exp]	1.00	0.9451	Pt-RFS.3
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	2.44	0.9080
AT4G17790			SNARE associated Golgi protein...		Potri.001G140200 [exp]	2.82	0.8878
AT4G08570			Heavy metal transport/detoxifi...		Potri.005G167000 [exp]	3.16	0.8822
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.006G109600 [exp]	6.00	0.8514	Pt-ATPK19.1
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	8.48	0.8461
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.005G203200 [exp]	9.79	0.8536
AT2G38905			Low temperature and salt respo...		Potri.010G217200 [exp]	10.24	0.8592
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Potri.016G046350 [exp]	14.96	0.8294
AT3G11930			Adenine nucleotide alpha hydro...		Potri.016G064000 [exp]	19.36	0.8325

Compare expression of checked genes

Potri.015G026300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.