Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52900 150 / 4e-45 MAKR6 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035200 [exp] 390 / 1e-139 AT5G52900 145 / 3e-43 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Potri.014G091500 [exp] 147 / 2e-44 AT5G52900 72 / 4e-15 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039313 [exp] 137 / 7e-40 AT5G52900 107 / 4e-28 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Lus10027554 [exp] 137 / 2e-38 AT5G52900 108 / 3e-27 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Lus10036407 [exp] 57 / 1e-09 ND 37 / 0.010
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G026600.1 pacid=42775228 polypeptide=Potri.015G026600.1.p locus=Potri.015G026600 ID=Potri.015G026600.1.v4.1 annot-version=v4.1 ATGGAAACTTCACAGCCTCTCTCTATTGAAAGCTTTTCATATAGTTGGTTAGTTAACCTGCAACCATCTCTGGAAAGCCTAGACAGTTCTTTCAGGGCCT CACTTGATGCATCAGATGAAGCTTCCTTCATTGAGATGGACCCAAGAATGCCACCATCTAAGAGATTCTTCAGAAATTCTCAGGAGTTCAAATTTGACTT CCCCGTTTCACAATCTCCTCTTACTCTTGTTCATGCTGATGAGCTCTTCTCCAATGGCTATGTCATGCCTCTCTTTGTCGATCCATTAACGATAGAGCCT TATGAAGTCTCAGATTCAACCGCAGCCCTTCCTACCTCTTCACATCCCCCAAAAACTGTGGTTTCAGCATGTAAACCTCGTCGCTGCTCTTCACTGAGAA GGTGCAGGAGAGTGTCAAAGCAAATAATTCAGAAGTACTTGGATTTTCTTAGGCCATTTTATCGAAGATTTCGAGGCCACAGGTCAAGTTCTAGAGCTGA AAATATTGATTCAAAAGTTCAGGTAATGAAGAGCTGGGAATATTCAGCAGAAACATCTCCAAGAATCAGTGTAGCTAATTCTGTCGACGATTGTTGGCGA AGATCTTGTGATTCTGAGAGCTCTATTTATGAGGCAGTTCTCCATTGCAAAAGATCAAATGGGAAATAA
AA sequence Show only first row Show all	>Potri.015G026600.1 pacid=42775228 polypeptide=Potri.015G026600.1.p locus=Potri.015G026600 ID=Potri.015G026600.1.v4.1 annot-version=v4.1 METSQPLSIESFSYSWLVNLQPSLESLDSSFRASLDASDEASFIEMDPRMPPSKRFFRNSQEFKFDFPVSQSPLTLVHADELFSNGYVMPLFVDPLTIEP YEVSDSTAALPTSSHPPKTVVSACKPRRCSSLRRCRRVSKQIIQKYLDFLRPFYRRFRGHRSSSRAENIDSKVQVMKSWEYSAETSPRISVANSVDDCWR RSCDSESSIYEAVLHCKRSNGK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G026600 [exp]	0	1
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G197200 [exp]	8.48	0.7823
AT1G26100			Cytochrome b561/ferric reducta...		Potri.010G131100 [exp]	9.89	0.8107
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.002G014100 [exp]	18.00	0.7702
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.008G155700 [exp]	20.49	0.7741
AT5G58300			Leucine-rich repeat protein ki...		Potri.016G139200 [exp]	23.30	0.7996
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	24.81	0.7468	PtrAUX1,AUX1.2
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.014G135510 [exp]	25.07	0.7703
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.015G077100 [exp]	28.03	0.7911
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G239650 [exp]	34.46	0.7150
AT2G01080			Late embryogenesis abundant (L...		Potri.001G163800 [exp]	35.70	0.7933

Compare expression of checked genes

Potri.015G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.